The impact of rearing environment on the development of gut microbiota in tilapia larvae

A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types

(2015) Mark A. Lever et al.   Frontiers in Microbiology

Characterization of the intestinal microbiota in Pacific white shrimp, Litopenaeus vannamei, fed diets with different lipid sources

(2014) Meiling Zhang et al.   AQUACULTURE

The development of the gut microbiota in rainbow trout (Oncorhynchus mykiss) is affected by first feeding and diet type

(2014) H.-C. Ingerslev et al.   AQUACULTURE

Alternative dietary protein sources for Atlantic salmon (Salmo salarL.) effect on intestinal microbiota, intestinal and liver histology and growth

(2014) M. Hartviksen et al.   AQUACULTURE NUTRITION

Identification of Bacterial Community Composition in Freshwater Aquaculture System Farming of Litopenaeus vannamei Reveals Distinct Temperature-Driven Patterns

(2014) Yuyi Tang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ecological theory as a foundation to control pathogenic invasion in aquaculture

(2014) Peter De Schryver et al.   ISME Journal

Intestinal microbiota in fishes: what's known and what's not

(2014) Kendall D. Clements et al.   MOLECULAR ECOLOGY

The Colonization Dynamics of the Gut Microbiota in Tilapia Larvae

(2014) Christos Giatsis et al.   PLoS One

Diversity, Community Composition, and Dynamics of Nonpigmented and Late-Pigmenting Rapidly Growing Mycobacteria in an Urban Tap Water Production and Distribution System

(2013) S. Dubrou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Aquacultured Rainbow Trout (Oncorhynchus mykiss) Possess a Large Core Intestinal Microbiota That Is Resistant to Variation in Diet and Rearing Density

(2013) S. Wong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Growth, digestive activity, welfare, and partial cost-effectiveness of genetically improved farmed tilapia (Oreochromis niloticus) cultured in a recirculating aquaculture system and an indoor biofloc system

(2013) Guozhi Luo et al.   AQUACULTURE

Water quality and growth of Pacific white shrimp Litopenaeus vannamei (Boone) in co-culture with green seaweed Ulva lactuca (Linaeus) in intensive system

(2013) Luis Otavio Brito et al.   AQUACULTURE INTERNATIONAL

Colonization of freshwater biofilms by nitrifying bacteria from activated sludge

(2013) Marc Mußmann et al.   FEMS MICROBIOLOGY ECOLOGY

Pyrosequencing survey of intestinal microbiota diversity in cultured sea bass (Dicentrarchus labrax) fed functional diets

(2013) Miguel Carda-Diéguez et al.   FEMS MICROBIOLOGY ECOLOGY

Prebiotic effects of arabinoxylan oligosaccharides on juvenile Siberian sturgeon (Acipenser baerii) with emphasis on the modulation of the gut microbiota using 454 pyrosequencing

(2013) Zahra Geraylou et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrogen and Phosphorus Dynamics in the Biofloc Production of the Pacific White Shrimp,Litopenaeus vannamei

(2013) Kassio Rios da Silva et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Microbial population dynamics in the faeces of wood-eating loricariid catfishes

(2013) N. Di Maiuta et al.   LETTERS IN APPLIED MICROBIOLOGY

Convergence of gut microbiomes in myrmecophagous mammals

(2013) Frédéric Delsuc et al.   MOLECULAR ECOLOGY

Relevance and Diversity of Nitrospira Populations in Biofilters of Brackish RAS

(2013) Myriam Kruse et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Live feed is not a major determinant of the microbiota associated with cod larvae (Gadus morhua)

(2013) Ingrid Bakke et al.   Environmental Microbiology Reports

Bacterial communities in different sections of a municipal wastewater treatment plant revealed by 16S rDNA 454 pyrosequencing

(2012) Lin Ye et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Ammonia-oxidizing archaea and nitrite-oxidizing nitrospiras in the biofilter of a shrimp recirculating aquaculture system

(2012) Monisha N. Brown et al.   FEMS MICROBIOLOGY ECOLOGY

Sediminibacterium ginsengisoli sp. nov., isolated from soil of a ginseng field, and emended descriptions of the genus Sediminibacterium and of Sediminibacterium salmoneum

(2012) Y.-J. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Unraveling assembly of stream biofilm communities

(2012) Katharina Besemer et al.   ISME Journal

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

PCR-TTGE Analysis of 16S rRNA from Rainbow Trout (Oncorhynchus mykiss) Gut Microbiota Reveals Host-Specific Communities of Active Bacteria

(2012) Paola Navarrete et al.   PLoS One

Bacterial Community Assembly and Turnover within the Intestines of Developing Zebrafish

(2012) Qingyun Yan et al.   PLoS One

Composition, Diversity, and Origin of the Bacterial Community in Grass Carp Intestine

(2012) Shangong Wu et al.   PLoS One

Examining the Fish Microbiome: Vertebrate-Derived Bacteria as an Environmental Niche for the Discovery of Unique Marine Natural Products

(2012) Laura M. Sanchez et al.   PLoS One

Gut bacteria associated with different diets in reared Nephrops norvegicus

(2012) Alexandra Meziti et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Characterization of bacterial community in the stomach of yellow catfish (Pelteobagrus fulvidraco)

(2012) Shangong Wu et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Microarray Analysis and Barcoded Pyrosequencing Provide Consistent Microbial Profiles Depending on the Source of Human Intestinal Samples

(2011) Bartholomeus van den Bogert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Water quality dynamics and shrimp (Litopenaeus vannamei) production in intensive, mesohaline culture systems with two levels of biofloc management

(2011) Andrew J. Ray et al.   AQUACULTURAL ENGINEERING

Nutritional influences on the gut microbiota and the consequences for gastrointestinal health

(2011) Karen P. Scott et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Pyrosequence analysis of bacterial communities in aerobic bioreactors treating polycyclic aromatic hydrocarbon-contaminated soil

(2011) David R. Singleton et al.   BIODEGRADATION

Effect of chitosan on UASB treating POME during a transition from mesophilic to thermophilic conditions

(2011) Maneerat Khemkhao et al.   BIORESOURCE TECHNOLOGY

Variations of both bacterial community and extracellular polymers: The inducements of increase of cell hydrophobicity from biofloc to aerobic granule sludge

(2011) Feng Guo et al.   BIORESOURCE TECHNOLOGY

Enhanced denitrification in groundwater and sediments from a nitrate-contaminated aquifer after addition of pyrite

(2011) Clara Torrentó et al.   CHEMICAL GEOLOGY

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

(2011) Tong Zhang et al.   ISME Journal

Assessing the Viability of Bacterial Species in Drinking Water by Combined Cellular and Molecular Analyses

(2011) Leila Kahlisch et al.   MICROBIAL ECOLOGY

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Effects of disinfectant and biofilm on the corrosion of cast iron pipes in a reclaimed water distribution system

(2011) Haibo Wang et al.   WATER RESEARCH

Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.)

(2011) Maartje AHJ van Kessel et al.   AMB Express

Performance and microbial community composition dynamics of aerobic granular sludge from sequencing batch bubble column reactors operated at 20 °C, 30 °C, and 35 °C

(2010) Sirous Ebrahimi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of rainbow trout (Oncorhynchus mykiss) intestinal microbiota and inflammatory marker gene expression in a recirculating aquaculture system

(2010) Graeme S. Mansfield et al.   AQUACULTURE

Microbial diversity of intestinal contents and mucus in yellow catfish (Pelteobagrus fulvidraco)

(2010) Shangong Wu et al.   AQUACULTURE

Role of gastrointestinal microbiota in fish

(2010) Sukanta K Nayak   AQUACULTURE RESEARCH

Microbial diversity of biological filters in recirculating aquaculture systems

(2010) Harold J Schreier et al.   CURRENT OPINION IN BIOTECHNOLOGY

Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis

(2010) Adam M Guss et al.   ISME Journal

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Gut Microbiota in Health and Disease

(2010) Inna Sekirov et al.   PHYSIOLOGICAL REVIEWS

Microbial community of acetate utilizing denitrifiers in aerobic granules

(2009) Sunil S. Adav et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Potential cause of aerobic granular sludge breakdown at high organic loading rates

(2009) Sunil S. Adav et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

(2009) P. J. Turnbaugh et al.   Science Translational Medicine

Compared microbiology of granular sludge under autotrophic, mixotrophic and heterotrophic denitrification conditions

(2009) N. Fernández et al.   WATER SCIENCE AND TECHNOLOGY

Probiotics in animal nutrition and health

(2009) F. Chaucheyras-Durand et al.   Beneficial Microbes

The basics of bio-flocs technology: The added value for aquaculture

(2008) P. De Schryver et al.   AQUACULTURE

The biofloc technology (BFT) in indoor tanks: Water quality, biofloc composition, and growth and welfare of Nile tilapia (Oreochromis niloticus)

(2008) M.E. Azim et al.   AQUACULTURE

Mycobacterium llatzerense sp. nov., a facultatively autotrophic, hydrogen-oxidizing bacterium isolated from haemodialysis water

(2008) M. Gomila et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS