Metabolite database for root, tuber, and banana crops to facilitate modern breeding in understudied crops

Effect of paleopolyploidy and allopolyploidy on gene expression in banana

(2019) Alberto Cenci et al.   BMC GENOMICS

The wild sweetpotato (Ipomoea trifida) genome provides insights into storage root development

(2019) Ming Li et al.   BMC PLANT BIOLOGY

Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community

(2019) Farhana R. Pinu et al.   Metabolites

Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia

(2018) Pablo Muñoz-Rodríguez et al.   CURRENT BIOLOGY

Advances in computational metabolomics and databases deepen the understanding of metabolisms

(2018) Hiroshi Tsugawa   CURRENT OPINION IN BIOTECHNOLOGY

Carotenoid profiling of yams: Clarity, comparisons and diversity

(2018) Elliott J. Price et al.   FOOD CHEMISTRY

Genetic identity in genebanks: application of the SolCAP 12K SNP array in fingerprinting and diversity analysis in the global in trust potato collection

(2018) David Ellis et al.   GENOME

Integrated Omics: Tools, Advances, and Future Approaches

(2018) Biswapriya B Misra et al.   JOURNAL OF MOLECULAR ENDOCRINOLOGY

Structural absorption by barbule microstructures of super black bird of paradise feathers

(2018) Dakota E. McCoy et al.   Nature Communications

Capturing Biochemical Diversity in Cassava (Manihot esculenta Crantz) through the Application of Metabolite Profiling

(2018) Margit Drapal et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Metabolic niches in the rhizosphere microbiome: new tools and approaches to analyse metabolic mechanisms of plant–microbe nutrient exchange

(2018) Richard P Jacoby et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular and Cytogenetic Study of East African Highland Banana

(2018) Alžběta Němečková et al.   Frontiers in Plant Science

Metabolic diversity in sweet potato (Ipomoea batatas, Lam.) leaves and storage roots

(2018) Margit Drapal et al.   Horticulture Research

Metabolome-wide association studies for agronomic traits of rice

(2017) Julong Wei et al.   HEREDITY

Metabolite profiling of yam (Dioscorea spp.) accessions for use in crop improvement programmes

(2017) Elliott J. Price et al.   Metabolomics

Navigating freely-available software tools for metabolomics analysis

(2017) Rachel Spicer et al.   Metabolomics

Identification of metabolites associated with water stress responses in Solanum tuberosum L. clones

(2017) M. Drapal et al.   PHYTOCHEMISTRY

Metabolite and transcript markers for the prediction of potato drought tolerance

(2017) Heike Sprenger et al.   PLANT BIOTECHNOLOGY JOURNAL

Re-defining the yam (Dioscorea spp.) core collection using morphological traits

(2017) Gezahegn Girma et al.   Plant Genetic Resources-Characterization and Utilization

Genome diversity of tuber-bearingSolanumuncovers complex evolutionary history and targets of domestication in the cultivated potato

(2017) Michael A. Hardigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolomics for Plant Improvement: Status and Prospects

(2017) Rakesh Kumar et al.   Frontiers in Plant Science

Re-defining the yam (Dioscorea spp.) core collection using morphological traits

(2017) Gezahegn Girma et al.   Plant Genetic Resources-Characterization and Utilization

Global chemical analysis of biology by mass spectrometry

(2017) Alexander A. Aksenov et al.   Nature Reviews Chemistry

Trait variation and genetic diversity in a banana genomic selection training population

(2017) Moses Nyine et al.   PLoS One

Construction of a genetic map using EST-SSR markers and QTL analysis of major agronomic characters in hexaploid sweet potato (Ipomoea batatas (L.) Lam)

(2017) Jin-Hee Kim et al.   PLoS One

FlavonoidSearch: A system for comprehensive flavonoid annotation by mass spectrometry

(2017) Nayumi Akimoto et al.   Scientific Reports

Metabolomics and genomics combine to unravel the pathway for the presence of fragrance in rice

(2017) Venea Dara Daygon et al.   Scientific Reports

Molecular and cytological characterization of the global Musa germplasm collection provides insights into the treasure of banana diversity

(2016) Pavla Christelová et al.   BIODIVERSITY AND CONSERVATION

A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives

(2016) Gautier Sarah et al.   Molecular Ecology Resources

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity

(2016) Jessen V Bredeson et al.   NATURE BIOTECHNOLOGY

Envirotyping for deciphering environmental impacts on crop plants

(2016) Yunbi Xu   THEORETICAL AND APPLIED GENETICS

Atmospheric transformation of plant volatiles disrupts host plant finding

(2016) Tao Li et al.   Scientific Reports

Marker-Based Estimates Reveal Significant Non-additive Effects in Clonally Propagated Cassava (Manihot esculenta): Implications for the Prediction of Total Genetic Value and the Selection of Varieties

(2016) M. D. Wolfe et al.   G3-Genes Genomes Genetics

Metabolite profiling of Dioscorea (yam) species reveals underutilised biodiversity and renewable sources for high-value compounds

(2016) Elliott J. Price et al.   Scientific Reports

Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

(2016) Valentina Cappello et al.   Scientific Reports

How do we address the disconnect between genetic and morphological diversity in germplasm collections?

(2015) Shelley H. Jansky et al.   AMERICAN JOURNAL OF BOTANY

Fluxes through plant metabolic networks: measurements, predictions, insights and challenges

(2015) Nicholas J. Kruger et al.   BIOCHEMICAL JOURNAL

Differentially penalized regression to predict agronomic traits from metabolites and markers in wheat

(2015) Jane Ward et al.   BMC GENETICS

Classification of cassava genotypes based on qualitative and quantitative data

(2015) E.J. Oliveira et al.   GENETICS AND MOLECULAR RESEARCH

The quest for tolerant varieties: the importance of integrating “omics” techniques to phenotyping

(2015) Michel Zivy et al.   Frontiers in Plant Science

metaMS: An open-source pipeline for GC–MS-based untargeted metabolomics

(2014) Ron Wehrens et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Metabolomics-assisted refinement of the pathways of steroidal glycoalkaloid biosynthesis in the tomato clade

(2014) Kevin Schwahn et al.   Journal of Integrative Plant Biology

Plant volatiles in polluted atmospheres: stress responses and signal degradation

(2014) JAMES D. BLANDE et al.   PLANT CELL AND ENVIRONMENT

Cassava genome from a wild ancestor to cultivated varieties

(2014) Wenquan Wang et al.   Nature Communications

A genome-wide metabolomic resource for tomato fruit from Solanum pennellii

(2014) Laura Perez-Fons et al.   Scientific Reports

Subchromoplast Sequestration of Carotenoids Affects Regulatory Mechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations

(2013) M. Nogueira et al.   PLANT CELL

Nontargeted Quantitation of Lipid Classes Using Hydrophilic Interaction Liquid Chromatography–Electrospray Ionization Mass Spectrometry with Single Internal Standard and Response Factor Approach

(2012) Eva Cífková et al.   ANALYTICAL CHEMISTRY

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

(2012) Christian Riedelsheimer et al.   NATURE GENETICS

Mining the Biodiversity of Plants: A Revolution in the Making

(2012) V. De Luca et al.   SCIENCE

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

The Use of Natural Genetic Diversity in the Understanding of Metabolic Organization and Regulation

(2011) Alisdair R. Fernie et al.   Frontiers in Plant Science

MassBank: a public repository for sharing mass spectral data for life sciences

(2010) Hisayuki Horai et al.   JOURNAL OF MASS SPECTROMETRY

Application of high-performance liquid chromatography with photodiode array detection to the metabolic profiling of plant isoprenoids

(2010) Paul D. Fraser et al.   PLANT JOURNAL

The Complex Genetic Architecture of the Metabolome

(2010) Eva K. F. Chan et al.   PLoS Genetics

MoTo DB: A Metabolic Database for Tomato

(2009) A. K. Grennan   PLANT PHYSIOLOGY

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS