Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

(2016) Nicholas H. Putnam et al.   GENOME RESEARCH

Conventional breeding, marker-assisted selection, genomic selection and inbreeding in clonally propagated crops: a case study for cassava

(2015) Hernán Ceballos et al.   THEORETICAL AND APPLIED GENETICS

Thai elite cassava genetic diversity was fortuitously conserved through farming with different sets of varieties

(2014) Yong-Bi Fu et al.   CONSERVATION GENETICS

Genetic Mapping Using Genotyping-by-Sequencing in the Clonally Propagated Cassava

(2014) Ismail Rabbi et al.   CROP SCIENCE

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

(2014) G Albert Wu et al.   NATURE BIOTECHNOLOGY

High-resolution mapping of resistance to cassava mosaic geminiviruses in cassava using genotyping-by-sequencing and its implications for breeding

(2014) Ismail Y. Rabbi et al.   VIRUS RESEARCH

Cassava genome from a wild ancestor to cultivated varieties

(2014) Wenquan Wang et al.   Nature Communications

Draft genome sequence of the rubber tree Hevea brasiliensis

(2013) Ahmad Yamin Abdul Rahman et al.   BMC GENOMICS

Unlocking the potential of tropical root crop biotechnology in east Africa by establishing a genetic transformation platform for local farmer-preferred cassava cultivars

(2013) Evans Nyaboga et al.   Frontiers in Plant Science

Transgenic RNA interference (RNAi)-derived field resistance to cassava brown streak disease

(2012) Emmanuel Ogwok et al.   MOLECULAR PLANT PATHOLOGY

The Cassava Genome: Current Progress, Future Directions

(2012) Simon Prochnik et al.   Tropical Plant Biology

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Molecular Markers and Their Application to Cassava Breeding: Past, Present and Future

(2011) Morag Ferguson et al.   Tropical Plant Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Wild Manihot species: botanical aspects, geographic distribution and economic value

(2009) Nagib M.A. Nassar et al.   GENETICS AND MOLECULAR RESEARCH