Applying genomic data in wildlife monitoring: Development guidelines for genotyping degraded samples with reduced single nucleotide polymorphism panels

The future is now: amplicon sequencing and sequence capture usher in the conservation genomics era

(2019) Mariah H. Meek et al.   Molecular Ecology Resources

Conservation genetics: Linking science with practice

(2019) Rolf Holderegger et al.   MOLECULAR ECOLOGY

Genomic approaches to identify hybrids and estimate admixture times in European wildcat populations

(2019) Federica Mattucci et al.   Scientific Reports

SNP marker panels for parentage assignment and traceability in the Florida bass ( Micropterus floridanus )

(2018) Honggang Zhao et al.   AQUACULTURE

Response to Britt et al. 2018 “The importance of non-academic co-authors in bridging the conservation genetics gap” Biological Conservation 218, 118–123

(2018) Carolyn J. Hogg et al.   BIOLOGICAL CONSERVATION

Range expansion as an explanation for introgression in European wildcats

(2018) B. Nussberger et al.   BIOLOGICAL CONSERVATION

The importance of non-academic coauthors in bridging the conservation genetics gap

(2018) Meghan Britt et al.   BIOLOGICAL CONSERVATION

Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies

(2018) Dorcus Kholofelo Malomane et al.   BMC GENOMICS

Genetic non-invasive sampling (gNIS) as a cost-effective tool for monitoring elusive small mammals

(2018) Clara Mendes Ferreira et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

Developing reduced SNP assays from whole-genome sequence data to estimate introgression in an organism with complex genetic patterns, the Iberian honeybee (Apis mellifera iberiensis )

(2018) Dora Henriques et al.   Evolutionary Applications

Genetic and genomic monitoring with minimally invasive sampling methods

(2018) Emma L. Carroll et al.   Evolutionary Applications

A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq data

(2018) Kimberly R. Andrews et al.   Molecular Ecology Resources

Testing a new SNP-chip on the Alpine and Apennine brown bear (Ursus arctos) populations using non-invasive samples

(2018) Patrizia Giangregorio et al.   Conservation Genetics Resources

Applications and efficiencies of the first cat 63K DNA array

(2018) Barbara Gandolfi et al.   Scientific Reports

Modeling SNP array ascertainment with Approximate Bayesian Computation for demographic inference

(2018) Consuelo D. Quinto-Cortés et al.   Scientific Reports

Distinguishing the victim from the threat: SNP-based methods reveal the extent of introgressive hybridization between wildcats and domestic cats in Scotland and inform future in situ and ex situ management options for species restoration

(2018) Helen V. Senn et al.   Evolutionary Applications

Next-generation metrics for monitoring genetic erosion within populations of conservation concern

(2017) Gregoire Leroy et al.   Evolutionary Applications

Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation

(2017) Sarah P. Flanagan et al.   Evolutionary Applications

Disentangling Timing of Admixture, Patterns of Introgression, and Phenotypic Indicators in a Hybridizing Wolf Population

(2017) Marco Galaverni et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and cost-effective single nucleotide polymorphism (SNP) detection in the absence of a reference genome using semideep next-generation Random Amplicon Sequencing (RAMseq)

(2017) Helmut Bayerl et al.   Molecular Ecology Resources

Development and characterization of 21 SNP markers in Manis javanica based on high-throughput sequencing

(2017) Linmiao Li et al.   Conservation Genetics Resources

Assessing SNP genotyping of noninvasively collected wildlife samples using microfluidic arrays

(2017) Alina von Thaden et al.   Scientific Reports

Discovery and characterization of single nucleotide polymorphisms in two anadromous alosine fishes of conservation concern

(2017) Diana S. Baetscher et al.   Ecology and Evolution

Bridging the conservation genetics gap by identifying barriers to implementation for conservation practitioners

(2017) Helen R. Taylor et al.   Global Ecology and Conservation

Golden Eagle fatalities and the continental-scale consequences of local wind-energy generation

(2016) Todd E. Katzner et al.   CONSERVATION BIOLOGY

Large-scale genetic census of an elusive carnivore, the European wildcat (Felis s. silvestris)

(2016) Katharina Steyer et al.   CONSERVATION GENETICS

Genetic structure and viability selection in the golden eagle (Aquila chrysaetos), a vagile raptor with a Holarctic distribution

(2016) Jacqueline M. Doyle et al.   CONSERVATION GENETICS

Single nucleotide polymorphisms to discriminate different classes of hybrid between wild Atlantic salmon and aquaculture escapees

(2016) Victoria L. Pritchard et al.   Evolutionary Applications

Landscape relatedness: detecting contemporary fine-scale spatial structure in wild populations

(2016) Anita J. Norman et al.   LANDSCAPE ECOLOGY

Conservation genomics of natural and managed populations: building a conceptual and practical framework

(2016) Laura Marilyn Benestan et al.   MOLECULAR ECOLOGY

Emerging Technologies to Conserve Biodiversity: Further Opportunities via Genomics. Response to Pimm et al.

(2016) Helen R. Taylor et al.   TRENDS IN ECOLOGY & EVOLUTION

Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application

(2016) Brittany A. Garner et al.   TRENDS IN ECOLOGY & EVOLUTION

Reply to Garner et al.

(2016) Aaron B.A. Shafer et al.   TRENDS IN ECOLOGY & EVOLUTION

Variability in total project and per sample genotyping costs under varying study designs including with microsatellites or SNPs to answer conservation genetic questions

(2016) Emily E. Puckett   Conservation Genetics Resources

Discovery of 20,000 RAD–SNPs and development of a 52-SNP array for monitoring river otters

(2016) Jeffrey B. Stetz et al.   Conservation Genetics Resources

Estimating population size using single-nucleotide polymorphism-based pedigree data

(2016) Robert Spitzer et al.   Ecology and Evolution

A New Panel of SNP Markers for the Individual Identification of North American Pumas

(2016) Robert R. Fitak et al.   Journal of Fish and Wildlife Management

Toward a genome-wide approach for detecting hybrids: informative SNPs to detect introgression between domestic cats and European wildcats (Felis silvestris)

(2015) R Oliveira et al.   HEREDITY

Decades of population genetic research reveal the need for harmonization of molecular markers: the grey wolfCanis lupusas a case study

(2015) G. Arjen de Groot et al.   MAMMAL REVIEW

High-throughput SNPs for all: genotyping-in-thousands

(2015) Scott A. Pavey   Molecular Ecology Resources

Discovery and characterization of single nucleotide polymorphisms in coho salmon,Oncorhynchus kisutch

(2015) Hilary A. Starks et al.   Molecular Ecology Resources

Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks

(2015) C. Lepoittevin et al.   Molecular Ecology Resources

Genomics and the challenging translation into conservation practice

(2015) Aaron B.A. Shafer et al.   TRENDS IN ECOLOGY & EVOLUTION

European wildcat populations are subdivided into five main biogeographic groups: consequences of Pleistocene climate changes or recent anthropogenic fragmentation?

(2015) Federica Mattucci et al.   Ecology and Evolution

From promise to practice: pairing non-invasive sampling with genomics in conservation

(2015) Michael A. Russello et al.   PeerJ

Mapping the spatial configuration of hybridization risk for an endangered population of the European wildcat (Felis silvestris silvestris) in Scotland

(2015) Kerry Kilshaw et al.   Mammal Research

Reduced SNP Panels for Genetic Identification and Introgression Analysis in the Dark Honey Bee (Apis mellifera mellifera)

(2015) Irene Muñoz et al.   PLoS One

Monitoring introgression in European wildcats in the Swiss Jura

(2014) B. Nussberger et al.   CONSERVATION GENETICS

A SNP chip to detect introgression in wildcats allows accurate genotyping of single hairs

(2014) Beatrice Nussberger et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

How and why should we implement genomics into conservation?

(2014) Barry J. McMahon et al.   Evolutionary Applications

Mapping migration in a songbird using high-resolution genetic markers

(2014) Kristen C. Ruegg et al.   MOLECULAR ECOLOGY

A single-nucleotide polymorphism-based approach for rapid and cost-effective genetic wolf monitoring in Europe based on noninvasively collected samples

(2014) Robert H. S. Kraus et al.   Molecular Ecology Resources

Potential barriers to gene flow in the endangered European wildcat (Felis silvestris)

(2013) Stefanie A. Hartmann et al.   CONSERVATION GENETICS

The number of markers and samples needed for detecting bottlenecks under realistic scenarios, with and without recovery: a simulation-based study

(2013) Sean M. Hoban et al.   MOLECULAR ECOLOGY

Development of SNP markers identifying European wildcats, domestic cats, and their admixed progeny

(2013) B. Nussberger et al.   Molecular Ecology Resources

Pitfalls of predicting complex traits from SNPs

(2013) Naomi R. Wray et al.   NATURE REVIEWS GENETICS

De Novo SNP Discovery in the Scandinavian Brown Bear (Ursus arctos)

(2013) Anita J. Norman et al.   PLoS One

Genetic structure of wildcat (Felis silvestris) populations in Italy

(2013) F. Mattucci et al.   Ecology and Evolution

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Hair trapping with valerian-treated lure sticks as a tool for genetic wildcat monitoring in low-density habitats

(2012) Katharina Steyer et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

Outlier loci highlight the direction of introgression in oaks

(2012) E. Guichoux et al.   MOLECULAR ECOLOGY

Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal

(2012) J. I. HOFFMAN et al.   Molecular Ecology Resources

Distribution and spatial genetic structure of European wildcat in France

(2011) L. Say et al.   ANIMAL CONSERVATION

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

(2011) S. J. HELYAR et al.   Molecular Ecology Resources

Effects of sample size, number of markers, and allelic richness on the detection of spatial genetic pattern

(2011) ERIN L. LANDGUTH et al.   Molecular Ecology Resources

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

ZUSAMMENSETZUNG VON POPULATIONEN UND KORRELATIONSERSCHEINUNGEN VOM STANDPUNKT DER VERERBUNGSLEHRE AUS BETRACHTET

(2010) STEN WAHLUND   HEREDITAS

Application of Quantitative Real-Time Polymerase Chain Reaction for Noninvasive Genetic Monitoring

(2010) Roland Hausknecht et al.   JOURNAL OF WILDLIFE MANAGEMENT

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Application of single nucleotide polymorphisms to non-model species: a technical review

(2010) M. R. GARVIN et al.   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Advancement to hair-sampling surveys of a medium-sized mammal: DNA-based individual identification and population estimation of a rare Australian marsupial, the spotted-tailed quoll (Dasyurus maculatus)

(2010) Monica Ruibal et al.   WILDLIFE RESEARCH

High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays

(2009) Jun Wang et al.   BMC GENOMICS

Where are we in conservation genetics and where do we need to go?

(2009) Richard Frankham   CONSERVATION GENETICS

Species identification in mammals from mixed biological samples based on mitochondrial DNA control region length polymorphism

(2009) Ka-Man Pun et al.   ELECTROPHORESIS

Tri-allelic SNP markers enable analysis of mixed and degraded DNA samples

(2009) Antoinette A. Westen et al.   Forensic Science International-Genetics

Effectiveness of microsatellite and SNP markers for parentage and identity analysis in species with low genetic diversity: the case of European bison

(2009) M Tokarska et al.   HEREDITY

Assessing statistical power of SNPs for population structure and conservation studies

(2009) PHILLIP A. MORIN et al.   Molecular Ecology Resources

Comparison of information content for microsatellites and SNPs in poultry and cattle

(2008) G. C. B. Schopen et al.   ANIMAL GENETICS

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS