Genetic structure and viability selection in the golden eagle (Aquila chrysaetos), a vagile raptor with a Holarctic distribution

Mitochondrial DNA analysis reveals Holarctic homogeneity and a distinct Mediterranean lineage in the Golden eagle (Aquila chrysaetos)

(2015) Carina Nebel et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Toll-like receptor diversity in 10 threatened bird species: relationship with microsatellite heterozygosity

(2015) Catherine E. Grueber et al.   CONSERVATION GENETICS

Population structure and dispersal patterns in Scottish Golden EaglesAquila chrysaetosrevealed by molecular genetic analysis of territorial birds

(2015) Rob Ogden et al.   IBIS

Gene-associated markers can assign origin in a weakly structured fish, Atlantic herring

(2015) Dorte Bekkevold et al.   ICES JOURNAL OF MARINE SCIENCE

Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication

(2015) Ryan J. Haasl et al.   MOLECULAR ECOLOGY

Known Breeding Distribution and Abundance of Golden Eagles in Eastern North America

(2015) François Morneau et al.   NORTHEASTERN NATURALIST

Genomics and the challenging translation into conservation practice

(2015) Aaron B.A. Shafer et al.   TRENDS IN ECOLOGY & EVOLUTION

A low-density SNP array for analyzing differential selection in freshwater and marine populations of threespine stickleback (Gasterosteus aculeatus)

(2014) Anne-Laure Ferchaud et al.   BMC GENOMICS

Natal Dispersal Distance of Bald and Golden Eagles Originating in the Coterminous United States as Inferred from Band Encounters

(2014) Brian A. Millsap et al.   JOURNAL OF RAPTOR RESEARCH

Mapping migration in a songbird using high-resolution genetic markers

(2014) Kristen C. Ruegg et al.   MOLECULAR ECOLOGY

Design of a 9K illumina BeadChip for polar bears (Ursus maritimus) from RAD and transcriptome sequencing

(2014) René M. Malenfant et al.   Molecular Ecology Resources

The Genome Sequence of a Widespread Apex Predator, the Golden Eagle (Aquila chrysaetos)

(2014) Jacqueline M. Doyle et al.   PLoS One

High-throughput sequencing reveals inbreeding depression in a natural population

(2014) J. I. Hoffman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms

(2013) Anthony G Doran et al.   BMC BIOINFORMATICS

Insights into the evolution of Darwin’s finches from comparative analysis of the Geospiza magnirostris genome sequence

(2013) Chris M Rands et al.   BMC GENOMICS

Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator

(2013) Qiu-Hong Wan et al.   CELL RESEARCH

Golden eagle population trends in the western United States: 1968-2010

(2013) Brian A. Millsap et al.   JOURNAL OF WILDLIFE MANAGEMENT

Reference-free SNP discovery for the Eurasian beaver from restriction site-associated DNA paired-end data

(2013) Helen Senn et al.   MOLECULAR ECOLOGY

Haplotype structure, adaptive history and associations with exploratory behaviour of theDRD4gene region in four great tit (Parus major) populations

(2013) Jakob C. Mueller et al.   MOLECULAR ECOLOGY

Genetic drift outweighs natural selection at toll-like receptor (TLR) immunity loci in a re-introduced population of a threatened species

(2013) Catherine E. Grueber et al.   MOLECULAR ECOLOGY

SNP development from RNA-seq data in a nonmodel fish: how many individuals are needed for accurate allele frequency prediction?

(2013) C. Schunter et al.   Molecular Ecology Resources

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle

(2013) Xiangjiang Zhan et al.   NATURE GENETICS

How to Make a Dolphin: Molecular Signature of Positive Selection in Cetacean Genome

(2013) Mariana F. Nery et al.   PLoS One

Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau

(2013) Yanhua Qu et al.   Nature Communications

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage

(2013) H Bradley Shaffer et al.   GENOME BIOLOGY

Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude

(2013) Qingle Cai et al.   GENOME BIOLOGY

Status, biology, and conservation priorities for North America's eastern Golden Eagle (Aquila chrysaetos) population

(2012)   AUK

BEDOPS: high-performance genomic feature operations

(2012) Shane Neph et al.   BIOINFORMATICS

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)

(2012) MORTEN T. LIMBORG et al.   MOLECULAR ECOLOGY

Allelematch: an R package for identifying unique multilocus genotypes where genotyping error and missing data may be present

(2012) PAUL GALPERN et al.   Molecular Ecology Resources

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Genetic diversity of a newly established population of golden eagles on the Channel Islands, California

(2011) Sarah A. Sonsthagen et al.   BIOLOGICAL CONSERVATION

Willow tit Parus montanus extrapair offspring are more heterozygous than their maternal half-siblings

(2011) Satu Lampila et al.   JOURNAL OF AVIAN BIOLOGY

Negligible evidence for regional genetic population structure for two shark species Rhizoprionodon acutus (Rüppell, 1837) and Sphyrna lewini (Griffith & Smith, 1834) with contrasting biology

(2011) Jennifer R. Ovenden et al.   MARINE BIOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Genetic signatures of population change in the British golden eagle (Aquila chrysaetos)

(2010) Brian P. Bourke et al.   CONSERVATION GENETICS

HETEROZYGOSITY-FITNESS CORRELATIONS: A TIME FOR REAPPRAISAL

(2010) Marta Szulkin et al.   EVOLUTION

Evolutionary Analysis and Expression Profiling of Zebra Finch Immune Genes

(2010) Robert Ekblom et al.   Genome Biology and Evolution

The Differential Evolutionary Dynamics of Avian Cytokine and TLR Gene Classes

(2010) T. Downing et al.   JOURNAL OF IMMUNOLOGY

Landscape characteristics influence morphological and genetic differentiation in a widespread raptor (Buteo jamaicensis)

(2010) JOSHUA M. HULL et al.   MOLECULAR ECOLOGY

The genome of a songbird

(2010) Wesley C. Warren et al.   NATURE

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Molecular evolution of genes in avian genomes

(2010) Kiwoong Nam et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Repeated sequence homogenization between the control and pseudo-control regions in the mitochondrial genomes of the subfamily Aquilinae

(2009) Luis Cadahía et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

A quantitative review of heterozygosity-fitness correlations in animal populations

(2009) J. R. CHAPMAN et al.   MOLECULAR ECOLOGY

Age-specific effect of heterozygosity on survival in alpine marmots,Marmota marmota

(2009) AURÉLIE COHAS et al.   MOLECULAR ECOLOGY

The influence of family groups on inferences made with the program Structure

(2009) E. C. ANDERSON et al.   Molecular Ecology Resources

MOVEMENTS OF GOLDEN EAGLES (AQUILA CHRYSAETOS) FROM INTERIOR ALASKA DURING THEIR FIRST YEAR OF INDEPENDENCE

(2008) CAROL L. McINTYRE et al.   AUK

Interspecific Patterns of Genetic Diversity in Birds: Correlations with Extinction Risk

(2008) SIMON R. EVANS et al.   CONSERVATION BIOLOGY

Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence?

(2008) FRISO P. PALSTRA et al.   MOLECULAR ECOLOGY

Patterns of Positive Selection in Six Mammalian Genomes

(2008) Carolin Kosiol et al.   PLoS Genetics