Single nucleotide polymorphisms to discriminate different classes of hybrid between wild Atlantic salmon and aquaculture escapees

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

Low but significant genetic differentiation underlies biologically meaningful phenotypic divergence in a large Atlantic salmon population

(2015) Tutku Aykanat et al.   MOLECULAR ECOLOGY

Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon

(2015) Nicola J. Barson et al.   NATURE

Genetic introgression of farmed salmon in native populations: quantifying the relative influence of population size and frequency of escapees

(2015) M Heino et al.   Aquaculture Environment Interactions

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

A comparison of gene transcription profiles of domesticated and wild Atlantic salmon (Salmo salar L.) at early life stages, reared under controlled conditions

(2014) Beatrix Bicskei et al.   BMC GENOMICS

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)

(2014) Ross D Houston et al.   BMC GENOMICS

Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing

(2014) Serap Gonen et al.   BMC GENOMICS

Effects of domestication on parr maturity, growth, and vulnerability to predation in Atlantic salmon

(2014) Paul V. Debes et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Genome-wide SNP analysis reveals a genetic basis for sea-age variation in a wild population of Atlantic salmon (Salmo salar)

(2014) Susan E. Johnston et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Footprints of Directional Selection in Wild Atlantic Salmon Populations: Evidence for Parasite-Driven Evolution?

(2014) Ksenia J. Zueva et al.   PLoS One

A standardized method for quantifying unidirectional genetic introgression

(2014) Sten Karlsson et al.   Ecology and Evolution

Atlantic salmon populations invaded by farmed escapees: quantifying genetic introgression with a Bayesian approach and SNPs

(2013) Kevin Glover et al.   BMC GENETICS

Cost-effective genome-wide estimation of allele frequencies from pooled DNA in Atlantic salmon (Salmo salar L.)

(2013) Mikhail Ozerov et al.   BMC GENOMICS

Fish scales and SNP chips: SNP genotyping and allele frequency estimation in individual and pooled DNA from historical samples of Atlantic salmon (Salmo salar)

(2013) Susan E Johnston et al.   BMC GENOMICS

Does Domestication Cause Changes in Growth Reaction Norms? A Study of Farmed, Wild and Hybrid Atlantic Salmon Families Exposed to Environmental Stress

(2013) Monica Favnebøe Solberg et al.   PLoS One

DNA Qualification Workflow for Next Generation Sequencing of Histopathological Samples

(2013) Michele Simbolo et al.   PLoS One

Finding Markers That Make a Difference: DNA Pooling and SNP-Arrays Identify Population Informative Markers for Genetic Stock Identification

(2013) Mikhail Ozerov et al.   PLoS One

Impending extinction of salmon, steelhead, and trout (Salmonidae) in California

(2012) Jacob Katz et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Differences in transcription levels among wild, domesticated, and hybrid Atlantic salmon (Salmo salar) from two environments

(2012) PAUL V. DEBES et al.   MOLECULAR ECOLOGY

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar)

(2012) Vincent Bourret et al.   MOLECULAR ECOLOGY

Three Decades of Farmed Escapees in the Wild: A Spatio-Temporal Analysis of Atlantic Salmon Population Genetic Structure throughout Norway

(2012) Kevin A. Glover et al.   PLoS One

Detection of outlier loci and their utility for fisheries management

(2011) Michael A. Russello et al.   Evolutionary Applications

Temporal change in genetic integrity suggests loss of local adaptation in a wild Atlantic salmon (Salmo salar) population following introgression by farmed escapees

(2011) V Bourret et al.   HEREDITY

Generic genetic differences between farmed and wild Atlantic salmon identified from a 7K SNP-chip

(2011) STEN KARLSSON et al.   Molecular Ecology Resources

Single-Nucleotide Polymorphisms (SNPs) under Diversifying Selection Provide Increased Accuracy and Precision in Mixed-Stock Analyses of Sockeye Salmon from the Copper River, Alaska

(2011) Michael W. Ackerman et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

High-grading bias: subtle problems with assessing power of selected subsets of loci for population assignment

(2010) ROBIN S. WAPLES   MOLECULAR ECOLOGY

Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased

(2010) E. C. ANDERSON   Molecular Ecology Resources

Identifying the source of farmed escaped Atlantic salmon (Salmo salar): Bayesian clustering analysis increases accuracy of assignment

(2009) Kevin A. Glover et al.   AQUACULTURE

Validation of pooled genotyping on the Affymetrix 500 k and SNP6.0 genotyping platforms using the polynomial-based probe-specific correction

(2009) Ramani Anantharaman et al.   BMC GENETICS

Distribution and biological characteristics of escaped farmed salmon in a major subarctic wild salmon river: implications for monitoring

(2009) Jaakko Erkinaro et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

A comparison of farmed, wild and hybrid Atlantic salmon (Salmo salar L.) reared under farming conditions

(2008) Kevin A. Glover et al.   AQUACULTURE

An improved method for predicting the accuracy of genetic stock identification

(2008) Eric C. Anderson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Temporally stable genetic structure and low migration in an Atlantic salmon population complex: implications for conservation and management

(2008) Juha-Pekka Vähä et al.   Evolutionary Applications

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS