Developing reduced SNP assays from whole-genome sequence data to estimate introgression in an organism with complex genetic patterns, the Iberian honeybee (Apis mellifera iberiensis )

Ultra-low-density genotype panels for breed assignment of Angus and Hereford cattle

(2016) M. M. Judge et al.   Animal

The Darwin cure for apiculture? Natural selection and managed honeybee health

(2016) Peter Neumann et al.   Evolutionary Applications

Genomic Analyses Reveal Demographic History and Temperate Adaptation of the Newly Discovered Honey Bee SubspeciesApis mellifera sinisxinyuann. ssp

(2016) Chao Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

SNPs selected by information content outperform randomly selected microsatellite loci for delineating genetic identification and introgression in the endangered dark European honeybee (Apis mellifera mellifera )

(2016) Irene Muñoz et al.   Molecular Ecology Resources

Origin, evolution and conservation of the honey bees from La Palma Island (Canary Islands): molecular and morphological data

(2015) Irati Miguel et al.   JOURNAL OF APICULTURAL RESEARCH

Revisiting the Iberian honey bee (Apis mellifera iberiensis) contact zone: maternal and genome-wide nuclear variations provide support for secondary contact from historical refugia

(2015) Julio Chávez-Galarza et al.   MOLECULAR ECOLOGY

A SNP test to identify Africanized honeybees via proportion of ‘African’ ancestry

(2015) Nadine C. Chapman et al.   Molecular Ecology Resources

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Extreme Recombination Frequencies Shape Genome Variation and Evolution in the Honeybee, Apis mellifera

(2015) Andreas Wallberg et al.   PLoS Genetics

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Reduced SNP Panels for Genetic Identification and Introgression Analysis in the Dark Honey Bee (Apis mellifera mellifera)

(2015) Irene Muñoz et al.   PLoS One

Evaluating the accuracy of AIM panels at quantifying genome ancestry

(2014) Jacobo Pardo-Seco et al.   BMC GENOMICS

Genetic integrity of the Dark European honey bee (Apis mellifera mellifera) from protected populations: a genome-wide assessment using SNPs and mtDNA sequence data

(2014) M Alice Pinto et al.   JOURNAL OF APICULTURAL RESEARCH

Effects of queen importation on the genetic diversity of Macaronesian island honey bee populations (Apis melliferaLinneaus 1758)

(2014) Irene Muñoz et al.   JOURNAL OF APICULTURAL RESEARCH

Effect of genotype and environment on parasite and pathogen levels in one apiary—a case study

(2014) Roy M Francis et al.   JOURNAL OF APICULTURAL RESEARCH

The influence of genetic origin and its interaction with environmental effects on the survival of Apis mellifera L. colonies in Europe

(2014) Ralph Büchler et al.   JOURNAL OF APICULTURAL RESEARCH

MtDNA COI-COII marker and drone congregation area: An efficient method to establish and monitor honeybee (Apis melliferaL.) conservation centres

(2014) Bénédicte Bertrand et al.   Molecular Ecology Resources

A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera

(2014) Andreas Wallberg et al.   NATURE GENETICS

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

Population genomics of the honey bee reveals strong signatures of positive selection on worker traits

(2014) B. A. Harpur et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maternal diversity patterns of Ibero-Atlantic populations reveal further complexity of Iberian honeybees

(2013) Maria Alice Pinto et al.   APIDOLOGIE

Selection of SNP from 50K and 777K arrays to predict breed of origin in cattle1

(2013) B. Hulsegge et al.   JOURNAL OF ANIMAL SCIENCE

Conserving genetic diversity in the honeybee: Comments on Harpuret al. (2012)

(2013) Pilar De la Rúa et al.   MOLECULAR ECOLOGY

Signatures of selection in the Iberian honey bee (Apis mellifera iberiensis) revealed by a genome scan analysis of single nucleotide polymorphisms

(2013) Julio Chávez-Galarza et al.   MOLECULAR ECOLOGY

RefSeq: an update on mammalian reference sequences

(2013) Kim D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

AncestrySNPminer: A bioinformatics tool to retrieve and develop ancestry informative SNP panels

(2012) Sushil Amirisetty et al.   GENOMICS

The honey bees of Ethiopia represent a new subspecies of Apis mellifera—Apis mellifera simensis n. ssp.

(2011) Marina D. Meixner et al.   APIDOLOGIE

Evaluation of approaches for identifying population informative markers from high density SNP Chips

(2011) Samantha Wilkinson et al.   BMC GENETICS

Comparison of measures of marker informativeness for ancestry and admixture mapping

(2011) Lili Ding et al.   BMC GENOMICS

Generic genetic differences between farmed and wild Atlantic salmon identified from a 7K SNP-chip

(2011) STEN KARLSSON et al.   Molecular Ecology Resources

Conserving diversity and vitality for honey bee breeding

(2010) Marina D Meixner et al.   JOURNAL OF APICULTURAL RESEARCH

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased

(2010) E. C. ANDERSON   Molecular Ecology Resources

Global pollinator declines: trends, impacts and drivers

(2010) Simon G. Potts et al.   TRENDS IN ECOLOGY & EVOLUTION

Biodiversity, conservation and current threats to European honeybees

(2009) Pilar De la Rúa et al.   APIDOLOGIE

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

A historical review of managed honey bee populations in Europe and the United States and the factors that may affect them

(2009) Dennis vanEngelsdorp et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Gene flow in admixed populations and implications for the conservation of the Western honeybee, Apis mellifera

(2008) Gabriele Soland-Reckeweg et al.   JOURNAL OF INSECT CONSERVATION

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH