Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks

High-throughput transcriptome sequencing and preliminary functional analysis in four Neotropical tree species

(2014) Louise Brousseau et al.   BMC GENOMICS

Development of genomic resources forNothofagusspecies using next-generation sequencing data

(2014) V. A. El Mujtar et al.   Molecular Ecology Resources

Multiple nuclear genes stabilize the phylogenetic backbone of the genusQuercus

(2014) François Hubert et al.   SYSTEMATICS AND BIODIVERSITY

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

(2013) Emilie Chancerel et al.   BMC BIOLOGY

Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing

(2013) Saneyoshi Ueno et al.   BMC GENOMICS

Imprints of Natural Selection Along Environmental Gradients in Phenology-Related Genes of Quercus petraea

(2013) F. J. Alberto et al.   GENETICS

Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners

(2013) Nathalie Pavy et al.   Molecular Ecology Resources

OakContigDF159.1, a reference library for studying differential gene expression inQuercus roburduring controlled biotic interactions: use for quantitative transcriptomic profiling of oak roots in ectomycorrhizal symbiosis

(2013) Mika T. Tarkka et al.   NEW PHYTOLOGIST

De novoassembly of maritime pine transcriptome: implications for forest breeding and biotechnology

(2013) Javier Canales et al.   PLANT BIOTECHNOLOGY JOURNAL

Development and Evaluation of SoySNP50K, a High-Density Genotyping Array for Soybean

(2013) Qijian Song et al.   PLoS One

Insights into drought adaptation of two European oak species revealed by nucleotide diversity of candidate genes

(2013) Andreas Homolka et al.   Tree Genetics & Genomes

Strength and variability of postmating reproductive isolating barriers between four European white oak species

(2013) O. Lepais et al.   Tree Genetics & Genomes

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms

(2012) Frank M You et al.   BMC GENOMICS

Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array

(2012) Laima Antanaviciute et al.   BMC GENOMICS

Comparative mapping in the Fagaceae and beyond with EST-SSRs

(2012) Catherine Bodénès et al.   BMC PLANT BIOLOGY

Outlier loci highlight the direction of introgression in oaks

(2012) E. Guichoux et al.   MOLECULAR ECOLOGY

Fagaceae trees as models to integrate ecology, evolution and genomics

(2012) Rémy J. Petit et al.   NEW PHYTOLOGIST

Novel SNP development and analysis at a NADP+-specific IDH enzyme gene in a four species mixed oak forest

(2012) A. Vidalis et al.   PLANT BIOLOGY

Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple

(2012) David Chagné et al.   PLoS One

Identification and Expression of Nine Oak Aquaporin Genes in the Primary Root Axis of Two Oak Species, Quercus petraea and Quercus robur

(2012) Claire Rasheed-Depardieu et al.   PLoS One

Genomics of Fagaceae

(2012) Antoine Kremer et al.   Tree Genetics & Genomes

The genomes of the giants: a walk through the forest of tree genomes

(2012) Albert Abbott   Tree Genetics & Genomes

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

(2011) André Gilles et al.   BMC GENOMICS

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

(2011) Emilie Chancerel et al.   BMC GENOMICS

Strength, diversity and plasticity of postmating reproductive barriers between two hybridizing oak species (Quercus robur L. and Quercus petraea (Matt) Liebl.)

(2011) P. ABADIE et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Development of versatile gene-based SNP assays in maize (Zea mays L.)

(2011) Jafar Mammadov et al.   MOLECULAR BREEDING

Forest tree genomics: growing resources and applications

(2011) David B. Neale et al.   NATURE REVIEWS GENETICS

Characterisation and natural variation of a dehydrin gene in Quercus petraea (Matt.) Liebl.

(2011) B. Vornam et al.   PLANT BIOLOGY

Role of waterlogging-responsive genes in shaping interspecific differentiation between two sympatric oak species

(2011) G. Le Provost et al.   TREE PHYSIOLOGY

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

(2010) Saneyoshi Ueno et al.   BMC GENOMICS

High-throughput genotyping of unknown genomic terrain in complex plant genomes: lessons from a case study

(2010) Simen Rød Sandve et al.   MOLECULAR BREEDING

In Vitro vs In Silico Detected SNPs for the Development of a Genotyping Array: What Can We Learn from a Non-Model Species?

(2010) Camille Lepoittevin et al.   PLoS One

Evolution of Disease Response Genes in Loblolly Pine: Insights from Candidate Genes

(2010) Elhan S. Ersoz et al.   PLoS One

Genomics of growth traits in forest trees

(2009) Dario Grattapaglia et al.   CURRENT OPINION IN PLANT BIOLOGY

Contrasting relationships between the diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks

(2009) J Derory et al.   HEREDITY

Species relative abundance and direction of introgression in oaks

(2009) O. LEPAIS et al.   MOLECULAR ECOLOGY

Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce

(2008) Nathalie Pavy et al.   BMC GENOMICS

Quality assessment parameters for EST-derived SNPs from catfish

(2008) Shaolin Wang et al.   BMC GENOMICS

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean

(2008) David L. Hyten et al.   THEORETICAL AND APPLIED GENETICS

"Contrasting Patterns of Selection at Pinus pinaster Ait. Drought Stress Candidate Genes as Revealed by Genetic Differentiation Analyses"

(2007) E. Eveno et al.   MOLECULAR BIOLOGY AND EVOLUTION