Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

Detecting signatures of positive selection in partial sequences generated on a large scale: pitfalls, procedures and resources

(2011) MARINE S. O. BRIEUC et al.   Molecular Ecology Resources

Identification of single nucleotide polymorphisms in candidate genes for growth and reproduction in a nonmodel organism; the Atlantic cod,Gadus morhua

(2011) JAKOB HEMMER-HANSEN et al.   Molecular Ecology Resources

Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome

(2011) M. V. EVERETT et al.   Molecular Ecology Resources

An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

(2011) LORENZ HAUSER et al.   Molecular Ecology Resources

Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim

(2010) S. Balzer et al.   BIOINFORMATICS

A comparison of SNP and STR loci for delineating population structure and performing individual genetic assignment

(2010) Kevin A Glover et al.   BMC GENETICS

A comparison of SNPs and microsatellites as linkage mapping markers: lessons from the zebra finch (Taeniopygia guttata)

(2010) Alexander D Ball et al.   BMC GENOMICS

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

High-grading bias: subtle problems with assessing power of selected subsets of loci for population assignment

(2010) ROBIN S. WAPLES   MOLECULAR ECOLOGY

Admixture facilitates adaptation from standing variation in the European aspen (Populus tremulaL.), a widespread forest tree

(2010) DULCINEIA DE CARVALHO et al.   MOLECULAR ECOLOGY

PEAS V1.0: a package for elementary analysis of SNP data

(2010) SHUHUA XU et al.   Molecular Ecology Resources

Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased

(2010) E. C. ANDERSON   Molecular Ecology Resources

Application of single nucleotide polymorphisms to non-model species: a technical review

(2010) M. R. GARVIN et al.   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Formulating a Historical and Demographic Model of Recent Human Evolution Based on Resequencing Data from Noncoding Regions

(2010) Guillaume Laval et al.   PLoS One

Ocean currents help explain population genetic structure

(2010) C. White et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data

(2010) M. Moragues et al.   THEORETICAL AND APPLIED GENETICS

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Correcting for ascertainment bias in the inference of population structure

(2009) Gilles Guillot et al.   BIOINFORMATICS

Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua)

(2009) Einar E Nielsen et al.   BMC EVOLUTIONARY BIOLOGY

Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library

(2009) Cecilia Sánchez et al.   BMC GENOMICS

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey

(2009) Hindrik HD Kerstens et al.   BMC GENOMICS

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

DISENTANGLING THE EFFECTS OF EVOLUTIONARY, DEMOGRAPHIC, AND ENVIRONMENTAL FACTORS INFLUENCING GENETIC STRUCTURE OF NATURAL POPULATIONS: ATLANTIC HERRING AS A CASE STUDY

(2009) Oscar E. Gaggiotti et al.   EVOLUTION

Statistical methods in spatial genetics

(2009) GILLES GUILLOT et al.   MOLECULAR ECOLOGY

Population genomics of marine fishes: identifying adaptive variation in space and time

(2009) EINAR E. NIELSEN et al.   MOLECULAR ECOLOGY

A computer program to simulate multilocus genotype data with spatially autocorrelated allele frequencies

(2009) GILLES GUILLOT et al.   Molecular Ecology Resources

Assessing statistical power of SNPs for population structure and conservation studies

(2009) PHILLIP A. MORIN et al.   Molecular Ecology Resources

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Sequencing in real time

(2009) Michael L Metzker   NATURE BIOTECHNOLOGY

Cheap third-generation sequencing

(2009) Nicole Rusk   NATURE METHODS

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

Accurate Inference of Subtle Population Structure (and Other Genetic Discontinuities) Using Principal Coordinates

(2009) Patrick A. Reeves et al.   PLoS One

Pervasive Hitchhiking at Coding and Regulatory Sites in Humans

(2009) James J. Cai et al.   PLoS Genetics

The Role of Geography in Human Adaptation

(2009) Graham Coop et al.   PLoS Genetics

Evaluation of next generation sequencing platforms for population targeted sequencing studies

(2009) Olivier Harismendy et al.   GENOME BIOLOGY

SNP analysis to results (SNPator): a web-based environment oriented to statistical genomics analyses upon SNP data

(2008) C. Morcillo-Suarez et al.   BIOINFORMATICS

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Shape-IT: new rapid and accurate algorithm for haplotype inference

(2008) Olivier Delaneau et al.   BMC BIOINFORMATICS

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection

(2008) Thomas Moen et al.   BMC GENETICS

EFFECT OF MUTATION ON GENETIC DIFFERENTIATION AMONG NONEQUILIBRIUM POPULATIONS

(2008) Nils Ryman et al.   EVOLUTION

Effects of Spatially Varying Selection on Nucleotide Diversity and Linkage Disequilibrium: Insights From Deer Mouse Globin Genes

(2008) J. F. Storz et al.   GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

How accurate is the current picture of human genetic variation?

(2008) I G Romero et al.   HEREDITY

Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce

(2008) MARIE-CLAIRE NAMROUD et al.   MOLECULAR ECOLOGY

Population genomics: a new generation of genome scans to bridge the gap with functional genomics

(2008) AURÉLIE BONIN   MOLECULAR ECOLOGY

GSTand its relatives do not measure differentiation

(2008) LOU JOST   MOLECULAR ECOLOGY

Spatial analysis method (sam): a software tool combining molecular and environmental data to identify candidate loci for selection

(2008) STÉPHANE JOOST et al.   Molecular Ecology Resources

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Natural selection has driven population differentiation in modern humans

(2008) Luis B Barreiro et al.   NATURE GENETICS

Interpreting principal component analyses of spatial population genetic variation

(2008) John Novembre et al.   NATURE GENETICS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Real-Time DNA Sequencing from Single Polymerase Molecules

(2008) J. Eid et al.   SCIENCE

"Contrasting Patterns of Selection at Pinus pinaster Ait. Drought Stress Candidate Genes as Revealed by Genetic Differentiation Analyses"

(2007) E. Eveno et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequencing breakthroughs for genomic ecology and evolutionary biology

(2007) MATTHEW E. HUDSON   Molecular Ecology Resources

bels: backward elimination locus selection for studies of mixture composition or individual assignment

(2007) JEFFREY F. BROMAGHIN   Molecular Ecology Resources