XG-PseU: an eXtreme Gradient Boosting based method for identifying pseudouridine sites

i6mA-Pred: Identifying DNA N6-methyladenine sites in the rice genome

(2019) Wei Chen et al.   BIOINFORMATICS

iMotor-CNN: Identifying molecular functions of cytoskeleton motor proteins using 2D convolutional neural network via Chou's 5-step rule

(2019) Nguyen Quoc Khanh Le et al.   ANALYTICAL BIOCHEMISTRY

iEnhancer-5Step: Identifying enhancers using hidden information of DNA sequences via Chou's 5-step rule and word embedding

(2019) Nguyen Quoc Khanh Le et al.   ANALYTICAL BIOCHEMISTRY

Ensemble learning algorithm based on multi-parameters for sleep staging

(2019) Qiangqiang Wang et al.   MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING

iN6-methylat (5-step): identifying DNA N6-methyladenine sites in rice genome using continuous bag of nucleobases via Chou’s 5-step rule

(2019) Nguyen Quoc Khanh Le   MOLECULAR GENETICS AND GENOMICS

Prediction of antiepileptic drug treatment outcomes of patients with newly diagnosed epilepsy by machine learning

(2019) Lijun Yao et al.   EPILEPSY & BEHAVIOR

iPseU-CNN: Identifying RNA Pseudouridine Sites Using Convolutional Neural Networks

(2019) Muhammad Tahir et al.   Molecular Therapy-Nucleic Acids

HBPred: a tool to identify growth hormone-binding proteins

(2018) Hua Tang et al.   International Journal of Biological Sciences

PseUI: Pseudouridine sites identification based on RNA sequence information

(2018) Jingjing He et al.   BMC BIOINFORMATICS

Molecular pathophysiology and genetic mutations in congenital sideroblastic anemia

(2018) Tohru Fujiwara et al.   FREE RADICAL BIOLOGY AND MEDICINE

RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data

(2017) Jia-Jia Xuan et al.   NUCLEIC ACIDS RESEARCH

MODOMICS: a database of RNA modification pathways. 2017 update

(2017) Pietro Boccaletto et al.   NUCLEIC ACIDS RESEARCH

IgG Glycome in Colorectal Cancer

(2016) F. Vuckovic et al.   CLINICAL CANCER RESEARCH

TargetM6A: Identifying N6-Methyladenosine Sites From RNA Sequences via Position-Specific Nucleotide Propensities and a Support Vector Machine

(2016) Guang-Qing Li et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Anomaly Detection Outperforms Logistic Regression in Predicting Outcomes in Trauma Patients

(2016) Zachary D. W. Dezman et al.   Prehospital Emergency Care

PPUS: a web server to predict PUS-specific pseudouridine sites: Table 1.

(2015) Yan-Hui Li et al.   BIOINFORMATICS

Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome

(2015) Xiaoyu Li et al.   Nature Chemical Biology

Towards a piRNA prediction using multiple kernel fusion and support vector machine

(2014) J. Brayet et al.   BIOINFORMATICS

Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

(2014) Schraga Schwartz et al.   CELL

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells

(2014) Thomas M. Carlile et al.   NATURE

A Pseudouridine Residue in the Spliceosome Core Is Part of the Filamentous Growth Program in Yeast

(2014) Anindita Basak et al.   Cell Reports

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition

(2013) Peng-Mian Feng et al.   ANALYTICAL BIOCHEMISTRY

Pathophysiology and genetic mutations in congenital sideroblastic anemia

(2013) Tohru Fujiwara et al.   PEDIATRICS INTERNATIONAL

Thermodynamic contribution and nearest-neighbor parameters of pseudouridine-adenosine base pairs in oligoribonucleotides

(2013) G. A. Hudson et al.   RNA

RNA pseudouridylation: new insights into an old modification

(2013) Junhui Ge et al.   TRENDS IN BIOCHEMICAL SCIENCES

A k-mer scheme to predict piRNAs and characterize locust piRNAs

(2011) Yi Zhang et al.   BIOINFORMATICS

An Indigenous Posttranscriptional Modification in the Ribosomal Peptidyl Transferase Center Confers Resistance to an Array of Protein Synthesis Inhibitors

(2008) Seok-Ming Toh et al.   JOURNAL OF MOLECULAR BIOLOGY