When you can’t trust the DNA: RNA editing changes transcript sequences

Gene regulation by SINES and inosines: biological consequences of A-to-I editing of Alu element inverted repeats

(2010) Ling-Ling Chen et al.   CELL CYCLE

RNA editing in six mitochondrial ribosomal protein genes of Didymium iridis

(2010) Peter G. Hendrickson et al.   CURRENT GENETICS

The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript

(2010) Eiji Tasaki et al.   PLANT JOURNAL

Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant

(2010) Ching-Chih Tseng et al.   PLANT MOLECULAR BIOLOGY

Alternative Splicing and Extensive RNA Editing of Human TPH2 Transcripts

(2010) Maik Grohmann et al.   PLoS One

Agmatidine, a modified cytidine in the anticodon of archaeal tRNAIle, base pairs with adenosine but not with guanosine

(2010) D. Mandal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adenosine-to-inosine RNA editing shapes transcriptome diversity in primates

(2010) N. Paz-Yaacov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uridine Insertion/Deletion RNA Editing in Trypanosomatids: Specific Stimulation in vitro of Leishmania tarentolae REL1 RNA Ligase Activity by the MP63 Zinc Finger Protein

(2010) Guanghan Gao et al.   PROTIST

Proteome diversification by adenosine to inosine RNA-editing

(2010) Dieter Pullirsch et al.   RNA Biology

Sequence based identification of RNA editing sites

(2010) Eli Eisenberg et al.   RNA Biology

Plant RNA editing

(2010) Anne-Laure Chateigner-Boutin et al.   RNA Biology

Two forms of RNA editing are required for tRNA maturation in Physarum mitochondria

(2010) J. M. Gott et al.   RNA

Dinoflagellate mitochondrial genomes: stretching the rules of molecular biology

(2009) Ross F. Waller et al.   BIOESSAYS

Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature

(2009) Henning Lenz et al.   CURRENT GENETICS

Snapshots of the RNA editing machine in trypanosomes captured at different assembly stages in vivo

(2009) Monika M Golas et al.   EMBO JOURNAL

Substitutional editing of Heterocapsa triquetra chloroplast transcripts and a folding model for its divergent chloroplast 16S rRNA

(2009) Yunkun Dang et al.   GENE

Origins and evolution of ADAR-mediated RNA editing

(2009) Yongfeng Jin et al.   IUBMB LIFE

A Protein-Protein Interaction Map of Trypanosome ∼20S Editosomes

(2009) Achim Schnaufer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Deficiency in APOBEC2 Leads to a Shift in Muscle Fiber Type, Diminished Body Mass, and Myopathy

(2009) Yusuke Sato et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal

(2009) Mareike Rüdinger et al.   MOLECULAR GENETICS AND GENOMICS

Effects of antidepressants on GluR2 Q/R site-RNA editing in modified HeLa cell line

(2009) Jun Sawada et al.   NEUROSCIENCE RESEARCH

A trans -splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii

(2009) Felix Grewe et al.   NUCLEIC ACIDS RESEARCH

Editing of HIV-1 RNA by the double-stranded RNA deaminase ADAR1 stimulates viral infection

(2009) Margherita Doria et al.   NUCLEIC ACIDS RESEARCH

Kinetoplastid RNA editing involves a 3′ nucleotidyl phosphatase activity

(2009) Moritz Niemann et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis tRNA Adenosine Deaminase Arginine Edits the Wobble Nucleotide of Chloroplast tRNAArg(ACG) and Is Essential for Efficient Chloroplast Translation

(2009) E. Delannoy et al.   PLANT CELL

Pentatricopeptide Repeat Proteins with the DYW Motif Have Distinct Molecular Functions in RNA Editing and RNA Cleavage in Arabidopsis Chloroplasts

(2009) K. Okuda et al.   PLANT CELL

A DYW Domain-Containing Pentatricopeptide Repeat Protein Is Required for RNA Editing at Multiple Sites in Mitochondria of Arabidopsis thaliana

(2009) A. Zehrmann et al.   PLANT CELL

A Study of New Arabidopsis Chloroplast RNA Editing Mutants Reveals General Features of Editing Factors and Their Target Sites

(2009) K. Hammani et al.   PLANT CELL

The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts

(2009) Kenji Okuda et al.   PLANT JOURNAL

AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcriptaccDRNA editing and early chloroplast biogenesis inArabidopsis thaliana

(2009) Qing-Bo Yu et al.   PLANT JOURNAL

RiceOGR1encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria

(2009) Sung-Ryul Kim et al.   PLANT JOURNAL

The PPR protein encoded by theLOVASTATIN INSENSITIVE 1gene is involved in RNA editing at three sites in mitochondria ofArabidopsis thaliana

(2009) Daniil Verbitskiy et al.   PLANT JOURNAL

LPA66 Is Required for Editing psbF Chloroplast Transcripts in Arabidopsis

(2009) W. Cai et al.   PLANT PHYSIOLOGY

MEF9, an E-Subclass Pentatricopeptide Repeat Protein, Is Required for an RNA Editing Event in the nad7 Transcript in Mitochondria of Arabidopsis

(2009) M. Takenaka   PLANT PHYSIOLOGY

Cascades of convergent evolution: The corresponding evolutionary histories of euglenozoans and dinoflagellates

(2009) J. Lukes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure of the core editing complex (L-complex) involved in uridine insertion/deletion RNA editing in trypanosomatid mitochondria

(2009) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct roles for sequences upstream of and downstream from Physarum editing sites

(2009) A. C. Rhee et al.   RNA

Identification of the chloroplast adenosine-to-inosine tRNA editing enzyme

(2009) D. Karcher et al.   RNA

A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript

(2009) J. C. Robbins et al.   RNA

The fraction of RNA that folds into the correct branched secondary structure determines hepatitis delta virus type 3 RNA editing levels

(2009) S. D. Linnstaedt et al.   RNA

Novel TUTase associates with an editosome-like complex in mitochondria of Trypanosoma brucei

(2009) I. Aphasizheva et al.   RNA

Uridine insertion/deletion RNA editing in trypanosomatid mitochondria: In search of the editosome

(2009) D. Osato et al.   RNA

A Cytidine Deaminase Edits C to U in Transfer RNAs in Archaea

(2009) L. Randau et al.   SCIENCE

Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors

(2009) J. Boch et al.   SCIENCE

A Simple Cipher Governs DNA Recognition by TAL Effectors

(2009) M. J. Moscou et al.   SCIENCE

Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing

(2009) J. B. Li et al.   SCIENCE

Group I-intron trans-splicing and mRNA editing in the mitochondria of placozoan animals

(2009) Gertraud Burger et al.   TRENDS IN GENETICS

Dynamic regulation of RNA editing of ion channels and receptors in the mammalian nervous system

(2009) Bao Tan et al.   Molecular Brain

Did RNA editing in plant organellar genomes originate under natural selection or through genetic drift?

(2008) Richard W Jobson et al.   Biology Direct

A conserved DYW domain of the pentatricopeptide repeat protein possesses a novel endoribonuclease activity

(2008) Takahiro Nakamura et al.   FEBS LETTERS

Altered editing in cyclic nucleotide phosphodiesterase 8A1 gene transcripts of systemic lupus erythematosus T lymphocytes

(2008) Robert J. Orlowski et al.   IMMUNOLOGY

Cross-competition in Editing of Chloroplast RNA Transcriptsin VitroImplicates Sharing of Trans-factors between Different C Targets

(2008) Wade P. Heller et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Non-DNA-Templated Addition of Nucleotides to the 3' End of RNAs by the Mitochondrial RNA Polymerase of Physarum polycephalum

(2008) M. L. Miller et al.   MOLECULAR AND CELLULAR BIOLOGY

Trypanosoma brucei RNA Editing: Coupled Cycles of U Deletion Reveal Processive Activity of the Editing Complex

(2008) V. S. Alatortsev et al.   MOLECULAR AND CELLULAR BIOLOGY

Organellar RNA Editing and Plant-Specific Extensions of Pentatricopeptide Repeat Proteins in Jungermanniid but not in Marchantiid Liverworts

(2008) M. Rudinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Mitochondrial Genome of the Gymnosperm Cycas taitungensis Contains a Novel Family of Short Interspersed Elements, Bpu Sequences, and Abundant RNA Editing Sites

(2008) S.-M. Chaw et al.   MOLECULAR BIOLOGY AND EVOLUTION

On the Expansion of the Pentatricopeptide Repeat Gene Family in Plants

(2008) N. O'Toole et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G

(2008) Kuan-Ming Chen et al.   NATURE

Determination of editors at the novel A-to-I editing positions

(2008) Yoshinori Nishimoto et al.   NEUROSCIENCE RESEARCH

CLB19, a pentatricopeptide repeat protein required for editing ofrpoAandclpPchloroplast transcripts

(2008) Anne-Laure Chateigner-Boutin et al.   PLANT JOURNAL

The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth

(2008) Wenbin Zhou et al.   PLANT JOURNAL

Alternative mRNA Editing in Trypanosomes Is Extensive and May Contribute to Mitochondrial Protein Diversity

(2008) Torsten Ochsenreiter et al.   PLoS One

A-to-I RNA editing alters less-conserved residues of highly conserved coding regions: Implications for dual functions in evolution

(2008) Y. Yang et al.   RNA

Specificity of ADAR-mediated RNA editing in newly identified targets

(2008) E. M. Riedmann et al.   RNA

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

(2008) C SCHMITZLINNEWEBER et al.   TRENDS IN PLANT SCIENCE

Genetic variability and mRNA editing frequencies of the phosphoprotein genes of wild-type measles viruses

(2008) B. Bankamp et al.   VIRUS RESEARCH

RNA editing in regulating gene expression in the brain

(2007) James E.C. Jepson et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Genetic Architecture of Mitochondrial Editing in Arabidopsis thaliana

(2007) S. Bentolila et al.   GENETICS