Molecular evolution of pentatricopeptide repeat genes reveals truncation in species lacking an editing target and structural domains under distinct selective pressures

Pentatricopeptide Repeat Proteins Constrain Genome Evolution in Chloroplasts

(2011) Michael L. Hayes et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure of human mitochondrial RNA polymerase

(2011) Rieke Ringel et al.   NATURE

Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems

(2011) Lakshminarayan M. Iyer et al.   NUCLEIC ACIDS RESEARCH

The E-Class PPR Protein MEF3 of Arabidopsis thaliana Can Also Function in Mitochondrial RNA Editing With an Additional DYW Domain

(2011) D. Verbitskiy et al.   PLANT AND CELL PHYSIOLOGY

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution

(2011) S. Fujii et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PPR proteins network as site-specific RNA editing factors in plant organelles

(2011) Anja Zehrmann et al.   RNA Biology

DYW-type PPR proteins in a heterolobosean protist: Plant RNA editing factors involved in an ancient horizontal gene transfer?

(2010) Volker Knoop et al.   FEBS LETTERS

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Loss of matK RNA editing in seed plant chloroplasts

(2009) Michael Tillich et al.   BMC EVOLUTIONARY BIOLOGY

A Study of New Arabidopsis Chloroplast RNA Editing Mutants Reveals General Features of Editing Factors and Their Target Sites

(2009) K. Hammani et al.   PLANT CELL

The PPR protein encoded by theLOVASTATIN INSENSITIVE 1gene is involved in RNA editing at three sites in mitochondria ofArabidopsis thaliana

(2009) Daniil Verbitskiy et al.   PLANT JOURNAL

LPA66 Is Required for Editing psbF Chloroplast Transcripts in Arabidopsis

(2009) W. Cai et al.   PLANT PHYSIOLOGY

Fast and accurate automatic structure prediction with HHpred

(2009) Andrea Hildebrand et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript

(2009) J. C. Robbins et al.   RNA

High Conservation of a 5′ Element Required for RNA Editing of a C Target in Chloroplast psbE Transcripts

(2008) Michael L. Hayes et al.   JOURNAL OF MOLECULAR EVOLUTION

Organellar RNA Editing and Plant-Specific Extensions of Pentatricopeptide Repeat Proteins in Jungermanniid but not in Marchantiid Liverworts

(2008) M. Rudinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

Amino acid sequence variations in Nicotiana CRR4 orthologs determine the species-specific efficiency of RNA editing in plastids

(2008) Kenji Okuda et al.   NUCLEIC ACIDS RESEARCH

Characterization of Raphanus sativus Pentatricopeptide Repeat Proteins Encoded by the Fertility Restorer Locus for Ogura Cytoplasmic Male Sterility

(2008) M. Uyttewaal et al.   PLANT CELL

CLB19, a pentatricopeptide repeat protein required for editing ofrpoAandclpPchloroplast transcripts

(2008) Anne-Laure Chateigner-Boutin et al.   PLANT JOURNAL

Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice

(2008) Tomohiko Kazama et al.   PLANT JOURNAL

Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand

(2008) R. Williams-Carrier et al.   RNA