Searching for phylogenetic patterns of Symbiodiniaceae community structure among Indo-Pacific Merulinidae corals

Effects of missing data and data type on phylotranscriptomic analysis of stony corals (Cnidaria: Anthozoa: Scleractinia)

(2019) Zheng Bin Randolph Quek et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Diversity of endosymbiotic Symbiodiniaceae in giant clams at Dongsha Atoll, northern South China Sea

(2019) Sherlyn Sher Qing Lim et al.   SYMBIOSIS

SymPortal: a novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling

(2019) B. C. C. Hume et al.   Molecular Ecology Resources

Maximising genetic diversity during coral transplantation from a highly impacted source reef

(2019) Lutfi Afiq-Rosli et al.   CONSERVATION GENETICS

Coral color and depth drive symbiosis ecology of Montipora capitata in Kāne‘ohe Bay, O‘ahu, Hawai‘i

(2018) T. Innis et al.   CORAL REEFS

Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato

(2018) Kelly Brener-Raffalli et al.   Microbiome

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Flexible Symbiotic Associations of Symbiodinium With Five Typical Coral Species in Tropical and Subtropical Reef Regions of the Northern South China Sea

(2018) Sanqiang Gong et al.   Frontiers in Microbiology

Host specificity of Symbiodinium variants revealed by an ITS2 metahaplotype approach

(2017) Edward G Smith et al.   ISME Journal

Coral Symbiodinium Community Composition Across the Belize Mesoamerican Barrier Reef System is Influenced by Host Species and Thermal Variability

(2017) J. H. Baumann et al.   MICROBIAL ECOLOGY

Symbiont community stability through severe coral bleaching in a thermally extreme lagoon

(2017) E. G. Smith et al.   Scientific Reports

Shift of symbiont communities in Acropora tenuis juveniles under heat stress

(2017) Makiko Yorifuji et al.   PeerJ

Symbiodiniumspp. associated with scleractinian corals from Dongsha Atoll (Pratas), Taiwan, in the South China Sea

(2017) Shashank Keshavmurthy et al.   PeerJ

Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands

(2017) Ross Cunning et al.   PeerJ

Heritability of the Symbiodinium community in vertically- and horizontally-transmitting broadcast spawning corals

(2017) Kate M. Quigley et al.   Scientific Reports

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals

(2016) Nadine M Boulotte et al.   ISME Journal

A Trait-Based Approach to Advance Coral Reef Science

(2016) Joshua S. Madin et al.   TRENDS IN ECOLOGY & EVOLUTION

Comparative genomics explains the evolutionary success of reef-forming corals

(2016) Debashish Bhattacharya et al.   eLife

The Coral Trait Database, a curated database of trait information for coral species from the global oceans

(2016) Joshua S. Madin et al.   Scientific Data

Symbiodinium clade C generality among common scleractinian corals in subtropical Hong Kong

(2016) Jane C.Y. Wong et al.   Regional Studies in Marine Science

The urban marine environment of Singapore

(2016) Tsai Min Sin et al.   Regional Studies in Marine Science

Horizontal transmission of Symbiodinium cells between adult and juvenile corals is aided by benthic sediment

(2015) Matthew R. Nitschke et al.   CORAL REEFS

Species Richness on Coral Reefs and the Pursuit of Convergent Global Estimates

(2015) Rebecca Fisher et al.   CURRENT BIOLOGY

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals

(2014) Rachel N. Silverstein et al.   GLOBAL CHANGE BIOLOGY

Community dynamics and physiology ofSymbiodiniumspp. before, during, and after a coral bleaching event

(2014) Dustin W. Kemp et al.   LIMNOLOGY AND OCEANOGRAPHY

AssessingSymbiodiniumdiversity in scleractinian corals via next-generation sequencing-based genotyping of the ITS2 rDNA region

(2014) Chatchanit Arif et al.   MOLECULAR ECOLOGY

ExploringSymbiodiniumdiversity and host specificity inAcroporacorals from geographical extremes of Western Australia with 454 amplicon pyrosequencing

(2014) L. Thomas et al.   MOLECULAR ECOLOGY

Ecologically differentiated stress-tolerant endosymbionts in the dinoflagellate genusSymbiodinium(Dinophyceae) Clade D are different species

(2014) Todd C. LaJeunesse et al.   PHYCOLOGIA

Deep-Sequencing Method for Quantifying Background Abundances of Symbiodinium Types: Exploring the Rare Symbiodinium Biosphere in Reef-Building Corals

(2014) Kate M. Quigley et al.   PLoS One

Spatio-Temporal Analyses of Symbiodinium Physiology of the Coral Pocillopora verrucosa along Large-Scale Nutrient and Temperature Gradients in the Red Sea

(2014) Yvonne Sawall et al.   PLoS One

Towards a phylogenetic classification of reef corals: the Indo-Pacific generaMerulina,GoniastreaandScapophyllia(Scleractinia, Merulinidae)

(2014) Danwei Huang et al.   ZOOLOGICA SCRIPTA

Taxonomic classification of the reef coral families Merulinidae, Montastraeidae, and Diploastraeidae (Cnidaria: Anthozoa: Scleractinia)

(2014) Danwei Huang et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

HOST-SPECIALIST LINEAGES DOMINATE THE ADAPTIVE RADIATION OF REEF CORAL ENDOSYMBIONTS

(2013) Daniel J. Thornhill et al.   EVOLUTION

Early uptake of specific symbionts enhances the post-settlement survival of Acropora corals

(2013) G Suzuki et al.   MARINE ECOLOGY PROGRESS SERIES

Corals from the Persian/Arabian Gulf as models for thermotolerant reef-builders: Prevalence of clade C3 Symbiodinium, host fluorescence and ex situ temperature tolerance

(2013) B. Hume et al.   MARINE POLLUTION BULLETIN

Microsatellite loci for Symbiodinium goreaui and other Clade C Symbiodinium

(2013) Drew C. Wham et al.   Conservation Genetics Resources

Anthropogenic extinction threats and future loss of evolutionary history in reef corals

(2013) Danwei Huang et al.   Ecology and Evolution

SymbioGBR: a web-based database of Symbiodinium associated with cnidarian hosts on the Great Barrier Reef

(2013) Linda Tonk et al.   BMC ECOLOGY

The promiscuous larvae: flexibility in the establishment of symbiosis in corals

(2012) V. R. Cumbo et al.   CORAL REEFS

Acropora recruits harbor “rare” Symbiodinium in the environmental pool

(2012) H. Yamashita et al.   CORAL REEFS

Host genetics and Symbiodinium D diversity in a stress-tolerant scleractinian coral, Oulastrea crispata, in the West Pacific

(2012) YT Lien et al.   MARINE ECOLOGY PROGRESS SERIES

Symbiont communities and host genetic structure of the brain coralPlatygyra verweyi, at the outlet of a nuclear power plant and adjacent areas

(2012) SHASHANK KESHAVMURTHY et al.   MOLECULAR ECOLOGY

Molecular phylogeny of the Robust clade (Faviidae, Mussidae, Merulinidae, and Pectiniidae): An Indian Ocean perspective

(2012) Roberto Arrigoni et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Threatened Reef Corals of the World

(2012) Danwei Huang   PLoS One

Diversity and Distribution of Symbiodinium Associated with Seven Common Coral Species in the Chagos Archipelago, Central Indian Ocean

(2012) Sung-Yin Yang et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Taxonomic classification of the reef coral family Mussidae (Cnidaria: Anthozoa: Scleractinia)

(2012) ANN F. BUDD et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Adaptive divergence in a scleractinian coral: physiological adaptation of Seriatopora hystrix to shallow and deep reef habitats

(2011) Pim Bongaerts et al.   BMC EVOLUTIONARY BIOLOGY

Cleaning up the 'Bigmessidae': Molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae

(2011) Danwei Huang et al.   BMC EVOLUTIONARY BIOLOGY

Environmental Factors Controlling the Distribution of Symbiodinium Harboured by the Coral Acropora millepora on the Great Barrier Reef

(2011) Timothy F. Cooper et al.   PLoS One

Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping

(2011) Todd C. LaJeunesse et al.   PLoS One

Coral thermal tolerance shaped by local adaptation of photosymbionts

(2011) E. J. Howells et al.   Nature Climate Change

Incongruence between morphotypes and genetically delimited species in the coral genus Stylophora: phenotypic plasticity, morphological convergence, morphological stasis or interspecific hybridization?

(2011) Jean-François Flot et al.   BMC ECOLOGY

Rethinking the Phylogeny of Scleractinian Corals: A Review of Morphological and Molecular Data

(2010) A. F. Budd et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genusSymbiodinium

(2010) Todd C. LaJeunesse et al.   JOURNAL OF BIOGEOGRAPHY

Corallite wall and septal microstructure in scleractinian reef corals: Comparison of molecular clades within the family Faviidae

(2010) Ann F. Budd et al.   JOURNAL OF MORPHOLOGY

The Relative Significance of Host–Habitat, Depth, and Geography on the Ecology, Endemism, and Speciation of Coral Endosymbionts in the Genus Symbiodinium

(2010) J. Christine Finney et al.   MICROBIAL ECOLOGY

Genetic Divergence across Habitats in the Widespread Coral Seriatopora hystrix and Its Associated Symbiodinium

(2010) Pim Bongaerts et al.   PLoS One

A Comprehensive Phylogenetic Analysis of the Scleractinia (Cnidaria, Anthozoa) Based on Mitochondrial CO1 Sequence Data

(2010) Marcelo V. Kitahara et al.   PLoS One

Host-symbiont recombination versus natural selection in the response of coral-dinoflagellate symbioses to environmental disturbance

(2010) T. C. LaJeunesse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Correlated evolution of sex and reproductive mode in corals (Anthozoa: Scleractinia)

(2010) A. M. Kerr et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals

(2009) Andrew H. Baird et al.   Annual Review of Ecology Evolution and Systematics

Juvenile corals can acquire more carbon from high-performance algal symbionts

(2009) N. E. Cantin et al.   CORAL REEFS

Reef Endemism, Host Specificity and Temporal Stability in Populations of Symbiotic Dinoflagellates from Two Ecologically Dominant Caribbean Corals

(2009) Daniel J. Thornhill et al.   PLoS One

Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral 'bleaching' event

(2009) T. C. LaJeunesse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Slow Mitochondrial COI Sequence Evolution at the Base of the Metazoan Tree and Its Implications for DNA Barcoding

(2008) Danwei Huang et al.   JOURNAL OF MOLECULAR EVOLUTION

More evidence for pervasive paraphyly in scleractinian corals: Systematic study of Southeast Asian Faviidae (Cnidaria; Scleractinia) based on molecular and morphological data

(2008) Danwei Huang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Metabolic interactions between algal symbionts and invertebrate hosts

(2008) DAVID YELLOWLEES et al.   PLANT CELL AND ENVIRONMENT

Mitochondrial and Nuclear Genes Suggest that Stony Corals Are Monophyletic but Most Families of Stony Corals Are Not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria)

(2008) Hironobu Fukami et al.   PLoS One

Bleaching susceptibility and mortality of corals are determined by fine-scale differences in symbiont type

(2008) E. M. Sampayo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhanced photoprotection pathways in symbiotic dinoflagellates of shallow-water corals and other cnidarians

(2008) J. M. Reynolds et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization

(2008) A.M Jones et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY