Towards a phylogenetic classification of reef corals: the Indo-Pacific generaMerulina,GoniastreaandScapophyllia(Scleractinia, Merulinidae)

With eyes wide open: a revision of species within and closely related to thePocillopora damicornisspecies complex (Scleractinia; Pocilloporidae) using morphology and genetics

(2014) Sebastian Schmidt-Roach et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Taxonomic classification of the reef coral families Merulinidae, Montastraeidae, and Diploastraeidae (Cnidaria: Anthozoa: Scleractinia)

(2014) Danwei Huang et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Extraordinary diversity of reef corals in the South China Sea

(2014) Danwei Huang et al.   Marine Biodiversity

Extreme phenotypic polymorphism in the coral genus Pocillopora; micro-morphology corresponds to mitochondrial groups, while colony morphology does not

(2013) Patricia Marti-Puig et al.   BULLETIN OF MARINE SCIENCE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Anthropogenic extinction threats and future loss of evolutionary history in reef corals

(2013) Danwei Huang et al.   Ecology and Evolution

Polyphyly and hidden species among Hawaiʻi’s dominant mesophotic coral genera,LeptoserisandPavona(Scleractinia: Agariciidae)

(2013) Daniel G. Luck et al.   PeerJ

Evolutionary insights into scleractinian corals using comparative genomic hybridizations

(2012) Manuel Aranda et al.   BMC GENOMICS

The first modern solitary Agariciidae (Anthozoa, Scleractinia) revealed by molecular and microstructural analysis

(2012) Marcelo V. Kitahara et al.   INVERTEBRATE SYSTEMATICS

Molecular phylogeny of the Robust clade (Faviidae, Mussidae, Merulinidae, and Pectiniidae): An Indian Ocean perspective

(2012) Roberto Arrigoni et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Threatened Reef Corals of the World

(2012) Danwei Huang   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Deltocyathiidae, an early-diverging family of Robust corals (Anthozoa, Scleractinia)

(2012) Marcelo V. Kitahara et al.   ZOOLOGICA SCRIPTA

Taxonomic classification of the reef coral family Mussidae (Cnidaria: Anthozoa: Scleractinia)

(2012) ANN F. BUDD et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Cleaning up the 'Bigmessidae': Molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae

(2011) Danwei Huang et al.   BMC EVOLUTIONARY BIOLOGY

On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature

(2011) Amrita Srivathsan et al.   CLADISTICS

Corallite wall and septal microstructure in scleractinian reef corals: Comparison of molecular clades within the family Faviidae

(2010) Ann F. Budd et al.   JOURNAL OF MORPHOLOGY

Ecomorph or Endangered Coral? DNA and Microstructure Reveal Hawaiian Species Complexes: Montipora dilatata/flabellata/turgescens & M. patula/verrilli

(2010) Zac H. Forsman et al.   PLoS One

The converging results of microstructural analysis and molecular phylogeny: Consequence for the overall evolutionary scheme of post-Paleozoic corals and the concept of Scleractinia

(2010) Jean-Pierre Cuif   Palaeoworld

Shape-shifting corals: Molecular markers show morphology is evolutionarily plastic in Porites

(2009) Zac H Forsman et al.   BMC EVOLUTIONARY BIOLOGY

Skeletal growth, ultrastructure and composition of the azooxanthellate scleractinian coral Balanophyllia regia

(2009) C. Brahmi et al.   CORAL REEFS

Implications of isolation and low genetic diversity in peripheral populations of an amphi-Atlantic coral

(2009) F. NUNES et al.   MOLECULAR ECOLOGY

Searching for new morphological characters in the systematics of scleractinian reef corals: comparison of septal teeth and granules between Atlantic and Pacific Mussidae

(2008) Ann F. Budd et al.   ACTA ZOOLOGICA

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology

(2008) Jean-François Flot et al.   COMPTES RENDUS BIOLOGIES

Mitochondrial sequences of Seriatopora corals show little agreement with morphology and reveal the duplication of a tRNA gene near the control region

(2008) J.-F. Flot et al.   CORAL REEFS

Re-evaluation of the systematics of the endemic corals of Brazil by molecular data

(2008) F. Nunes et al.   CORAL REEFS

Slow Mitochondrial COI Sequence Evolution at the Base of the Metazoan Tree and Its Implications for DNA Barcoding

(2008) Danwei Huang et al.   JOURNAL OF MOLECULAR EVOLUTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

More evidence for pervasive paraphyly in scleractinian corals: Systematic study of Southeast Asian Faviidae (Cnidaria; Scleractinia) based on molecular and morphological data

(2008) Danwei Huang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial and Nuclear Genes Suggest that Stony Corals Are Monophyletic but Most Families of Stony Corals Are Not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria)

(2008) Hironobu Fukami et al.   PLoS One

The Use of Mean Instead of Smallest Interspecific Distances Exaggerates the Size of the “Barcoding Gap” and Leads to Misidentification

(2008) Rudolf Meier et al.   SYSTEMATIC BIOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY