ExploringSymbiodiniumdiversity and host specificity inAcroporacorals from geographical extremes of Western Australia with 454 amplicon pyrosequencing

Deep-Sequencing Method for Quantifying Background Abundances of Symbiodinium Types: Exploring the Rare Symbiodinium Biosphere in Reef-Building Corals

(2014) Kate M. Quigley et al.   PLoS One

The Microbiome of the Red Sea Coral Stylophora pistillata Is Dominated by Tissue-Associated Endozoicomonas Bacteria

(2013) Till Bayer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Integrating connectivity science and spatial conservation management of coral reefs in north-west Australia

(2013) Jim N. Underwood et al.   JOURNAL FOR NATURE CONSERVATION

Corals from the Persian/Arabian Gulf as models for thermotolerant reef-builders: Prevalence of clade C3 Symbiodinium, host fluorescence and ex situ temperature tolerance

(2013) B. Hume et al.   MARINE POLLUTION BULLETIN

Ecological Inferences from a deep screening of the Complex Bacterial Consortia associated with the coral, Porites astreoides

(2013) Mauricio Rodriguez-Lanetty et al.   MOLECULAR ECOLOGY

Bacterial communities and species-specific associations with the mucus of Brazilian coral species

(2013) Camila Carlos et al.   Scientific Reports

The distribution of the thermally tolerant symbiont lineage (Symbiodiniumclade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress

(2013) Michael Stat et al.   Ecology and Evolution

Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi

(2013) Daniel L. Lindner et al.   Ecology and Evolution

Pyrosequencing Reveals Diverse and Distinct Sponge-Specific Microbial Communities in Sponges from a Single Geographical Location in Irish Waters

(2012) Stephen A. Jackson et al.   MICROBIAL ECOLOGY

Effects of OTU Clustering and PCR Artifacts on Microbial Diversity Estimates

(2012) Nastassia V. Patin et al.   MICROBIAL ECOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Symbiont communities and host genetic structure of the brain coralPlatygyra verweyi, at the outlet of a nuclear power plant and adjacent areas

(2012) SHASHANK KESHAVMURTHY et al.   MOLECULAR ECOLOGY

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

Unprecedented Mass Bleaching and Loss of Coral across 12° of Latitude in Western Australia in 2010–11

(2012) James A. Y. Moore et al.   PLoS One

Specificity is rarely absolute in coral-algal symbiosis: implications for coral response to climate change

(2012) R. N. Silverstein et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Modelling the potential transport of tropical fish larvae in the Leeuwin Current

(2011) A. Pearce et al.   CONTINENTAL SHELF RESEARCH

The effect of temperature stress on coral–Symbiodinium associations containing distinct symbiont types

(2011) P. L. Fisher et al.   CORAL REEFS

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

(2011) HOLLY M. BIK et al.   MOLECULAR ECOLOGY

Symbiodinium diversity among host clionaid sponges from Caribbean and Pacific reefs: Evidence of heteroplasmy and putative host-specific symbiont lineages

(2011) Malcolm Hill et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Environmental Factors Controlling the Distribution of Symbiodinium Harboured by the Coral Acropora millepora on the Great Barrier Reef

(2011) Timothy F. Cooper et al.   PLoS One

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Resistance to thermal stress in corals without changes in symbiont composition

(2011) A. J. Bellantuono et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Coral thermal tolerance shaped by local adaptation of photosymbionts

(2011) E. J. Howells et al.   Nature Climate Change

Australian corals thriving out of water in an extreme environment

(2010) N. L. Rosser et al.   CORAL REEFS

Local endemicity and high diversity characterise high-latitude coral–Symbiodinium partnerships

(2010) L. C. Wicks et al.   CORAL REEFS

Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genusSymbiodinium

(2010) Todd C. LaJeunesse et al.   JOURNAL OF BIOGEOGRAPHY

COMPARISON OF ENDOSYMBIOTIC AND FREE-LIVING SYMBIODINIUM (DINOPHYCEAE) DIVERSITY IN A HAWAIIAN REEF ENVIRONMENT1

(2010) Xavier Pochon et al.   JOURNAL OF PHYCOLOGY

Novel algal symbiont (Symbiodinium spp.) diversity in reef corals of Western Australia

(2010) RN Silverstein et al.   MARINE ECOLOGY PROGRESS SERIES

Protein expression and genetic structure of the coralPorites lobatain an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity?

(2010) D. J. BARSHIS et al.   MOLECULAR ECOLOGY

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i

(2010) Xavier Pochon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

Host-symbiont recombination versus natural selection in the response of coral-dinoflagellate symbioses to environmental disturbance

(2010) T. C. LaJeunesse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Development of clade-specific Symbiodinium primers for quantitative PCR (qPCR) and their application to detecting clade D symbionts in Caribbean corals

(2009) Adrienne M. S. Correa et al.   MARINE BIOLOGY

Specificity in communities of Symbiodinium in corals from Johnston Atoll

(2009) M Stat et al.   MARINE ECOLOGY PROGRESS SERIES

Cohesive molecular genetic data delineate species diversity in the dinoflagellate genusSymbiodinium

(2009) E. M. SAMPAYO et al.   MOLECULAR ECOLOGY

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Process-oriented modeling studies of the 5500-km-long boundary flow off western and southern Australia

(2008) Mary L. Batteen et al.   CONTINENTAL SHELF RESEARCH

High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium

(2008) E. J. Howells et al.   CORAL REEFS

Bleaching susceptibility and mortality of corals are determined by fine-scale differences in symbiont type

(2008) E. M. Sampayo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization

(2008) A.M Jones et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES