Genome-wide identification of drought-responsive microRNAs in two sets of Malus from interspecific hybrid progenies

Comprehensive genomic analysis of the TYROSINE AMINOTRANSFERASE (TAT) genes in apple (Malus domestica) allows the identification of MdTAT2 conferring tolerance to drought and osmotic stresses in plants

(2018) Haibo Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The contrasting microRNA content of a drought tolerant and a drought susceptible wheat cultivar

(2017) Behnam Bakhshi et al.   JOURNAL OF PLANT PHYSIOLOGY

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

MicroRNA156 improves drought stress tolerance in alfalfa ( Medicago sativa ) by silencing SPL13

(2017) Muhammad Arshad et al.   PLANT SCIENCE

microRNAs and Their Targets in Apple (Malus domestica cv. “Fuji”) Involved in Response to Infection of Pathogen Valsa mali

(2017) Hao Feng et al.   Frontiers in Plant Science

Small RNA-Sequencing Links Physiological Changes and RdDM Process to Vegetative-to-Floral Transition in Apple

(2017) Xinwei Guo et al.   Frontiers in Plant Science

SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering

(2016) Jae-Hoon Jung et al.   Molecular Plant

Small RNA and degradome deep sequencing reveals drought-and tissue-specific micrornas and their important roles in drought-sensitive and drought-tolerant tomato genotypes

(2016) Bilgin Candar-Cakir et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

(2015) Boon Huat Cheah et al.   BMC GENOMICS

Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

(2015) Xiaobai Li et al.   BMC GENOMICS

Uncovering co-expression gene network modules regulating fruit acidity in diverse apples

(2015) Yang Bai et al.   BMC GENOMICS

Shoot bending promotes flower bud formation by miRNA-mediated regulation in apple (Malus domesticaBorkh.)

(2015) Libo Xing et al.   PLANT BIOTECHNOLOGY JOURNAL

Arabidopsis RZFP34/CHYR1, a Ubiquitin E3 Ligase, Regulates Stomatal Movement and Drought Tolerance via SnRK2.6-Mediated Phosphorylation

(2015) Shuangcheng Ding et al.   PLANT CELL

AmicroRNAallele that emerged prior to apple domestication may underlie fruit size evolution

(2015) Jia-Long Yao et al.   PLANT JOURNAL

miR408is involved in abiotic stress responses in Arabidopsis

(2015) Chao Ma et al.   PLANT JOURNAL

Comparative Transcriptomes Analysis of Red- and White-Fleshed Apples in an F1 Population of Malus sieversii f. niedzwetzkyana Crossed with M. domestica ‘Fuji’

(2015) Nan Wang et al.   PLoS One

De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification

(2014) Steven A Yates et al.   BMC GENOMICS

Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton

(2014) Fuliang Xie et al.   JOURNAL OF EXPERIMENTAL BOTANY

Drought adaptation of stay-green sorghum is associated with canopy development, leaf anatomy, root growth, and water uptake

(2014) Andrew K. Borrell et al.   JOURNAL OF EXPERIMENTAL BOTANY

Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice

(2014) Yujie Fang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential expression of microRNAs and other small RNAs in barley between water and drought conditions

(2014) Michael Hackenberg et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of apple miRNAs and their potential role in fire blight resistance

(2014) Elżbieta Kaja et al.   Tree Genetics & Genomes

Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis

(2013) Peng Shuai et al.   BMC GENOMICS

Silencing the SpMPK1, SpMPK2, and SpMPK3 Genes in Tomato Reduces Abscisic Acid—Mediated Drought Tolerance

(2013) Cui Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Emerging roles of microRNAs in the mediation of drought stress response in plants

(2013) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cloning and Characterization of miRNAs and Their Targets, Including a Novel miRNA-Targeted NBS–LRR Protein Class Gene in Apple (Golden Delicious)

(2013) Chao Ma et al.   Molecular Plant

APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs

(2013) Francesco Licausi et al.   NEW PHYTOLOGIST

Heat stress induction ofmiR398triggers a regulatory loop that is critical for thermotolerance in Arabidopsis

(2013) Qingmei Guan et al.   PLANT JOURNAL

The Suppression of WRKY44 by GIGANTEA-miR172 Pathway Is Involved in Drought Response of Arabidopsis thaliana

(2013) Yingying Han et al.   PLoS One

Novel Positive Regulatory Role for the SPL6 Transcription Factor in the N TIR-NB-LRR Receptor-Mediated Plant Innate Immunity

(2013) Meenu S. Padmanabhan et al.   PLoS Pathogens

Drought induced programmed cell death and associated changes in antioxidants, proteases, and lipid peroxidation in wheat leaves

(2012) A. Hameed et al.   BIOLOGIA PLANTARUM

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

(2012) Ming Wen et al.   BMC BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

BrRZFP1aBrassica rapaC3HC4-type RING zinc finger protein involved in cold, salt and dehydration stress

(2012) Y. J. Jung et al.   PLANT BIOLOGY

Influence of rootstock on antioxidant system in leaves and roots of young apple trees in response to drought stress

(2012) Binghua Liu et al.   PLANT GROWTH REGULATION

Genome-Wide Identification of miRNAs Responsive to Drought in Peach (Prunus persica) by High-Throughput Deep Sequencing

(2012) Vahap Eldem et al.   PLoS One

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Apple miRNAs and tasiRNAs with novel regulatory networks

(2012) Rui Xia et al.   GENOME BIOLOGY

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

Identification of novel soybean microRNAs involved in abiotic and biotic stresses

(2011) Franceli R Kulcheski et al.   BMC GENOMICS

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica

(2011) Bosheng Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional network

(2011) Dortje Golldack et al.   PLANT CELL REPORTS

Arabidopsis thaliana WRKY25, WRKY26, and WRKY33 coordinate induction of plant thermotolerance

(2011) Shujia Li et al.   PLANTA

Overexpression of HARDY, an AP2/ERF gene from Arabidopsis, improves drought and salt tolerance by reducing transpiration and sodium uptake in transgenic Trifolium alexandrinum L.

(2011) Gaber M. Abogadallah et al.   PLANTA

Integrated Profiling of MicroRNAs and mRNAs: MicroRNAs Located on Xq27.3 Associate with Clear Cell Renal Cell Carcinoma

(2011) Liang Zhou et al.   PLoS One

Responses of apple fruit size to tree water status and crop load

(2011) A. Naor et al.   TREE PHYSIOLOGY

Non-coding small RNAs responsive to abiotic stress in wheat (Triticum aestivum L.)

(2010) Yingyin Yao et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

SQUAMOSA Promoter-Binding Protein-Like Transcription Factors: Star Players for Plant Growth and Development

(2010) Xiaobo Chen et al.   Journal of Integrative Plant Biology

Overexpression of an ERF transcription factorTSRF1improves rice drought tolerance

(2010) Ruidang Quan et al.   PLANT BIOTECHNOLOGY JOURNAL

Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants

(2010) Shou-Qiang Ouyang et al.   PLANT JOURNAL

Genetic studies on resistance to Valsa canker in apple: genetic variance and breeding values estimated from intra- and inter-specific hybrid progeny populations

(2010) Kazuyuki Abe et al.   Tree Genetics & Genomes

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

Why the need for qPCR publication guidelines?—The case for MIQE

(2009) Stephen A. Bustin   METHODS

miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula

(2009) Inês Trindade et al.   PLANTA

A Genome-Wide Characterization of MicroRNA Genes in Maize

(2009) Lifang Zhang et al.   PLoS Genetics

A toolkit for analysing large-scale plant small RNA datasets

(2008) S. Moxon et al.   BIOINFORMATICS

Virus infection improves drought tolerance

(2008) Ping Xu et al.   NEW PHYTOLOGIST

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Stress-responsive microRNAs inPopulus

(2008) Shanfa Lu et al.   PLANT JOURNAL

Reconstituting plant miRNA biogenesis

(2008) J.-K. Zhu   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA