Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

Comparative Proteomic Analysis of Labellum and Inner Lateral Petals in Cymbidium ensifolium Flowers

(2014) Xiaobai Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Analysis of the Inflorescence miRNome of the Orchid Orchis italica Reveals a DEF-Like MADS-Box Gene as a New miRNA Target

(2014) Serena Aceto et al.   PLoS One

Evolutionary conservation of microRNA regulatory programs in plant flower development

(2013) Yan Luo et al.   DEVELOPMENTAL BIOLOGY

Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis

(2013) Xiyan Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic diversity, population structure, pollen morphology and cross-compatibility among ChineseCymbidiums

(2013) Xiaobai Li et al.   PLANT BREEDING

Catalog of Erycina pusilla miRNA and categorization of reproductive phase-related miRNAs and their target gene families

(2013) Choun-Sea Lin et al.   PLANT MOLECULAR BIOLOGY

Identification and Functional Analysis of Flowering Related microRNAs in Common Wild Rice (Oryza rufipogon Griff.)

(2013) Zongxiang Chen et al.   PLoS One

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

(2012) Ming Wen et al.   BMC BIOINFORMATICS

Identifying miRNAs, targets and functions

(2012) B. Liu et al.   BRIEFINGS IN BIOINFORMATICS

ArabidopsisRNA-binding Protein FCA Regulates MicroRNA172 Processing in Thermosensory Flowering

(2012) Jae-Hoon Jung et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Regulation of Leaf Morphology by MicroRNA394 and its Target LEAF CURLING RESPONSIVENESS

(2012) Jian Bo Song et al.   PLANT AND CELL PHYSIOLOGY

Gibberellin Regulates the Arabidopsis Floral Transition through miR156-Targeted SQUAMOSA PROMOTER BINDING-LIKE Transcription Factors

(2012) S. Yu et al.   PLANT CELL

The Arabidopsis MicroRNA396-GRF1/GRF3 Regulatory Module Acts as a Developmental Regulator in the Reprogramming of Root Cells during Cyst Nematode Infection

(2012) T. Hewezi et al.   PLANT PHYSIOLOGY

Functional analysis of FLOWERING LOCUS T orthologs from spring orchid (Cymbidium goeringii Rchb. f.) that regulates the vegetative to reproductive transition

(2012) Lin Xiang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Identification and characterization of maize microRNAs involved in the very early stage of seed germination

(2011) Liwen Wang et al.   BMC GENOMICS

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Duplicated C-Class MADS-Box Genes Reveal Distinct Roles in Gynostemium Development in Cymbidium ensifolium (Orchidaceae)

(2011) Shih-Yu Wang et al.   PLANT AND CELL PHYSIOLOGY

An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis

(2011) Qing-Jun Luo et al.   PLANT MOLECULAR BIOLOGY

Small RNA Profiling in Two Brassica napus Cultivars Identifies MicroRNAs with Oil Production- and Development-Correlated Expression and New Small RNA Classes

(2011) Y.-T. Zhao et al.   PLANT PHYSIOLOGY

Integrated Profiling of MicroRNAs and mRNAs: MicroRNAs Located on Xq27.3 Associate with Clear Cell Renal Cell Carcinoma

(2011) Liang Zhou et al.   PLoS One

Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

(2011) Li Wei et al.   GENOME BIOLOGY

Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)

(2010) Changnian Song et al.   BMC GENOMICS

Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)

(2010) Chuan-Zhi Zhao et al.   BMC PLANT BIOLOGY

Cloning, characterization, and expression of xyloglucan endotransglucosylase/hydrolase and expansin genes associated with petal growth and development during carnation flower opening

(2010) Taro Harada et al.   JOURNAL OF EXPERIMENTAL BOTANY

Plasticity of Xyloglucan Composition in Bean (Phaseolus vulgaris)-Cultured Cells during Habituation and Dehabituation to Lethal Concentrations of Dichlobenil

(2010) A. Alonso-Simón et al.   Molecular Plant

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

The role of floral organs in carpels, an Arabidopsis loss-of-function mutation in MicroRNA160a, in organogenesis and the mechanism regulating its expression

(2010) Xiaodong Liu et al.   PLANT JOURNAL

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Genome size diversity in orchids: consequences and evolution

(2009) I. J. Leitch et al.   ANNALS OF BOTANY

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

Genome-wide profiling of Populus small RNAs

(2009) Daniel Klevebring et al.   BMC GENOMICS

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173

(2009) Felipe F Felippes et al.   EMBO REPORTS

Large-scale genome analysis reveals unique features of microRNAs

(2009) Baohong Zhang et al.   GENE

High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)

(2009) Deyou Qiu et al.   GENE

Gibberellin and Jasmonate Crosstalk during Stamen Development

(2009) Jinrong Peng   Journal of Integrative Plant Biology

Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development

(2009) Eun Kyung Yoon et al.   NUCLEIC ACIDS RESEARCH

Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing

(2009) L.-C. Hsieh et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A toolkit for analysing large-scale plant small RNA datasets

(2008) S. Moxon et al.   BIOINFORMATICS

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

(2008) Gyorgy Szittya et al.   BMC GENOMICS

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Conifers have a unique small RNA silencing signature

(2008) E. V. Dolgosheina et al.   RNA