Small RNA-Sequencing Links Physiological Changes and RdDM Process to Vegetative-to-Floral Transition in Apple

The functions of plant small RNAs in development and in stress responses

(2017) Shengjun Li et al.   PLANT JOURNAL

RNA-Directed DNA Methylation: The Evolution of a Complex Epigenetic Pathway in Flowering Plants

(2015) Marjori A. Matzke et al.   Annual Review of Plant Biology

A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch]

(2015) Christina E Wells et al.   BMC PLANT BIOLOGY

Role of cin-miR2118 in drought stress responses in Caragana intermedia and Tobacco

(2015) Bi-fei Wu et al.   GENE

Transcription profiling of the chilling requirement for bud break in apples: a putative role for FLC-like genes

(2015) Diogo Denardi Porto et al.   JOURNAL OF EXPERIMENTAL BOTANY

To Bloom or Not to Bloom: Role of MicroRNAs in Plant Flowering

(2015) Sachin Teotia et al.   Molecular Plant

DNA methylation pathways and their crosstalk with histone methylation

(2015) Jiamu Du et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Shoot bending promotes flower bud formation by miRNA-mediated regulation in apple (Malus domesticaBorkh.)

(2015) Libo Xing et al.   PLANT BIOTECHNOLOGY JOURNAL

Ectopic expression of the apple Md-miR172e gene alters flowering time and floral organ identity in Arabidopsis

(2015) Qiang Zhao et al.   PLANT CELL TISSUE AND ORGAN CULTURE

MicroRNA396-TargetedSHORT VEGETATIVE PHASEIs Required to Repress Flowering and Is Related to the Development of Abnormal Flower Symptoms by the Phyllody Symptoms1 Effector

(2015) Chiao-Yin Yang et al.   PLANT PHYSIOLOGY

Physiological differences between bud breaking and flowering after dormancy completion revealed byDAMandFT/TFL1expression in Japanese pear (Pyrus pyrifolia)

(2015) Akiko Ito et al.   TREE PHYSIOLOGY

New insights into pri-miRNA processing and accumulation in plants

(2015) Shuxin Zhang et al.   Wiley Interdisciplinary Reviews-RNA

Genome-wide identification of vegetative phase transition-associated microRNAs and target predictions using degradome sequencing in Malus hupehensis

(2015) Libo Xing et al.   BMC GENOMICS

miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data

(2014) Jiyuan An et al.   BMC BIOINFORMATICS

Identification of miRNAs involved in pear fruit development and quality

(2014) Jun Wu et al.   BMC GENOMICS

MicroRNA408 Is Critical for theHY5-SPL7Gene Network That Mediates the Coordinated Response to Light and Copper

(2014) Huiyong Zhang et al.   PLANT CELL

Whole-genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis

(2014) Hongxing Yang et al.   PLANT JOURNAL

Identification of apple miRNAs and their potential role in fire blight resistance

(2014) Elżbieta Kaja et al.   Tree Genetics & Genomes

Arabidopsis miR171-Targeted Scarecrow-Like Proteins Bind to GT cis-Elements and Mediate Gibberellin-Regulated Chlorophyll Biosynthesis under Light Conditions

(2014) Zhaoxue Ma et al.   PLoS Genetics

Identification and characterization of FaSOC1, a homolog of SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 from strawberry

(2013) Heng-jiu Lei et al.   GENE

Computational identification of microRNAs and their targets in apple

(2013) Keyong Ye et al.   Genes & Genomics

The regulation of seasonal flowering in the Rosaceae

(2013) Takeshi Kurokura et al.   JOURNAL OF EXPERIMENTAL BOTANY

The inhibitory effect of ABA on floral transition is mediated by ABI5 in Arabidopsis

(2013) Yanping Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cloning and Characterization of miRNAs and Their Targets, Including a Novel miRNA-Targeted NBS–LRR Protein Class Gene in Apple (Golden Delicious)

(2013) Chao Ma et al.   Molecular Plant

Flower Development under Drought Stress: Morphological and Transcriptomic Analyses Reveal Acute Responses and Long-Term Acclimation in Arabidopsis

(2013) Z. Su et al.   PLANT CELL

Constitutive Expression of a miR319 Gene Alters Plant Development and Enhances Salt and Drought Tolerance in Transgenic Creeping Bentgrass

(2013) M. Zhou et al.   PLANT PHYSIOLOGY

Molecular Basis of Age-Dependent Vernalization in Cardamine flexuosa

(2013) C.-M. Zhou et al.   SCIENCE

Mechanisms of Age-Dependent Response to Winter Temperature in Perennial Flowering of Arabis alpina

(2013) S. Bergonzi et al.   SCIENCE

Genome wide identification of chilling responsive microRNAs in Prunus persica

(2012) Abdelali Barakat et al.   BMC GENOMICS

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

Ectopic expression of the apple Md-miRNA156h gene regulates flower and fruit development in Arabidopsis

(2012) Chao Sun et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Identification and Characterization of PpLFL, a Homolog of FLORICAULA/LEAFY in Peach (Prunus persica)

(2012) Lijun An et al.   PLANT MOLECULAR BIOLOGY REPORTER

Alternate Bearing in Citrus: Changes in the Expression of Flowering Control Genes and in Global Gene Expression in ON- versus OFF-Crop Trees

(2012) Liron Shalom et al.   PLoS One

PEP1 of Arabis alpina Is Encoded by Two Overlapping Genes That Contribute to Natural Genetic Variation in Perennial Flowering

(2012) Maria C. Albani et al.   PLoS Genetics

Apple miRNAs and tasiRNAs with novel regulatory networks

(2012) Rui Xia et al.   GENOME BIOLOGY

The control of developmental phase transitions in plants

(2011) P. Huijser et al.   DEVELOPMENT

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase

(2011) Chen Wang et al.   PHYSIOLOGIA PLANTARUM

Regulation of auxin response by miR393-targeted transport inhibitor response protein 1 is involved in normal development in Arabidopsis

(2011) Zhe-Hao Chen et al.   PLANT MOLECULAR BIOLOGY

MiRNA Control of Vegetative Phase Change in Trees

(2011) Jia-Wei Wang et al.   PLoS Genetics

Dynamics of DNA methylation and Histone H4 acetylation during floral bud differentiation in azalea

(2010) Mónica Meijón et al.   BMC PLANT BIOLOGY

Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis

(2010) Vitantonio Pantaleo et al.   PLANT JOURNAL

Over-expression of an FT-homologous gene of apple induces early flowering in annual and perennial plants

(2010) Conny Tränkner et al.   PLANTA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Acetylated H4 histone and genomic DNA methylation patterns during bud set and bud burst in Castanea sativa

(2009) MaEstrella Santamaría et al.   JOURNAL OF PLANT PHYSIOLOGY

Four TFL1/CEN-Like Genes on Distinct Linkage Groups Show Different Expression Patterns to Regulate Vegetative and Reproductive Development in Apple (Malus×domestica Borkh.)

(2009) Naozumi Mimida et al.   PLANT AND CELL PHYSIOLOGY

SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis

(2009) H. Yamasaki et al.   PLANT CELL

VvCO and VvCOL1, two CONSTANS homologous genes, are regulated during flower induction and dormancy in grapevine buds

(2009) Rubén Almada et al.   PLANT CELL REPORTS

Differential and dynamic regulation of miR398 in response to ABA and salt stress in Populus tremula and Arabidopsis thaliana

(2009) Xiaoyun Jia et al.   PLANT MOLECULAR BIOLOGY

Floral induction in mature, perennial angiosperm fruit trees: Similarities and discrepancies with annual/biennial plants and the involvement of plant hormones

(2009) K.F. Bangerth   SCIENTIA HORTICULTURAE

MicroRNA-mediated Systemic Down-regulation of Copper Protein Expression in Response to Low Copper Availability inArabidopsis

(2008) Salah E. Abdel-Ghany et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL