Comparative Transcriptomes Analysis of Red- and White-Fleshed Apples in an F1 Population of Malus sieversii f. niedzwetzkyana Crossed with M. domestica ‘Fuji’

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Effect of auxin, cytokinin and nitrogen on anthocyanin biosynthesis in callus cultures of red-fleshed apple (Malus sieversii f.niedzwetzkyana)

(2014) Xiao-Hao Ji et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Glutathione transferase supergene family in tomato: Salt stress-regulated expression of representative genes from distinct GST classes in plants primed with salicylic acid

(2014) Jolán Csiszár et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transcriptional regulation of secondary metabolite biosynthesis in plants

(2013) Barunava Patra et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Regulation, evolution, and functionality of flavonoids in cereal crops

(2013) Zehou Liu et al.   BIOTECHNOLOGY LETTERS

The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity

(2013) Kazuki Saito et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Expression and functional analysis of a novel MYB gene, MdMYB110a_JP, responsible for red flesh, not skin color in apple fruit

(2013) Hitomi Umemura et al.   PLANTA

Transcriptome changes during fruit development and ripening of sweet orange (Citrus sinensis)

(2012) Keqin Yu et al.   BMC GENOMICS

Transcriptomic analysis of ‘Suli’ pear (Pyrus pyrifolia white pear group) buds during the dormancy by RNA-Seq

(2012) Guoqin Liu et al.   BMC GENOMICS

Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation

(2012) Lisa J Rowland et al.   BMC PLANT BIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

An Ancient Duplication of Apple MYB Transcription Factors Is Responsible for Novel Red Fruit-Flesh Phenotypes

(2012) D. Chagne et al.   PLANT PHYSIOLOGY

Genetic diversity of red-fleshed apples (Malus)

(2011) Steven van Nocker et al.   EUPHYTICA

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene Expression and Metabolite Profiling of Developing Highbush Blueberry Fruit Indicates Transcriptional Regulation of Flavonoid Metabolism and Activation of Abscisic Acid Metabolism

(2011) M. Zifkin et al.   PLANT PHYSIOLOGY

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Mechanisms independent of abscisic acid (ABA) or proline feedback have a predominant role in transcriptional regulation of proline metabolism during low water potential and stress recovery

(2010) SANDEEP SHARMA et al.   PLANT CELL AND ENVIRONMENT

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245

(2009) Ji Huang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Multiple Repeats of a Promoter Segment Causes Transcription Factor Autoregulation in Red Apples

(2009) R. V. Espley et al.   PLANT CELL

Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology

(2009) J.-G. Joung et al.   PLANT PHYSIOLOGY

The Role of Annexin 1 in Drought Stress in Arabidopsis

(2009) D. Konopka-Postupolska et al.   PLANT PHYSIOLOGY

The Grapevine R2R3-MYB Transcription Factor VvMYBF1 Regulates Flavonol Synthesis in Developing Grape Berries

(2009) S. Czemmel et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Expression analysis of a novel pyridoxal kinase messenger RNA splice variant, PKL, in oil rape suffering abiotic stress and phytohormones

(2008) Shunwu Yu et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Purification, molecular cloning, and characterization of glutathione S-transferases (GSTs) from pigmented Vitis vinifera L. cell suspension cultures as putative anthocyanin transport proteins

(2008) Simon Conn et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ectopic expression of an annexin from Brassica juncea confers tolerance to abiotic and biotic stress treatments in transgenic tobacco

(2008) Sravan Kumar Jami et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY