On the accuracy of genomic prediction models considering multi-trait and allele dosage in Urochloa spp. interspecific tetraploid hybrids

Bayesian analysis and prediction of hybrid performance

(2019) Filipe Couto Alves et al.   Plant Methods

Genetic Variance Partitioning and Genome-Wide Prediction with Allele Dosage Information in Autotetraploid Potato

(2018) Jeffrey B. Endelman et al.   GENETICS

Improving accuracies of genomic predictions for drought tolerance in maize by joint modeling of additive and dominance effects in multi-environment trials

(2018) Kaio Olímpio Das Graças Dias et al.   HEREDITY

Genomic relationships reveal significant dominance effects for growth in hybrid Eucalyptus

(2018) Biyue Tan et al.   PLANT SCIENCE

Genomic Selection for Late Blight and Common Scab Resistance in Tetraploid Potato ( Solanum tuberosum )

(2018) Felix Enciso-Rodriguez et al.   G3-Genes Genomes Genetics

Genomic Prediction in a Multiploid Crop: Genotype by Environment Interaction and Allele Dosage Effects on Predictive Ability in Banana

(2018) Moses Nyine et al.   Plant Genome

Tools for Genetic Studies in Experimental Populations of Polyploids

(2018) Peter M. Bourke et al.   Frontiers in Plant Science

Development and Applications of a High Throughput Genotyping Tool for Polyploid Crops: Single Nucleotide Polymorphism (SNP) Array

(2018) Qian You et al.   Frontiers in Plant Science

Genetic Variance Partitioning and Genome-Wide Prediction with Allele Dosage Information in Autotetraploid Potato

(2018) Jeffrey B. Endelman et al.   GENETICS

Contribution of Additive and Dominance Effects on Agronomical and Nutritional Traits, and Multivariate Selection on spp. Hybrids

(2018) Filipe Inácio Matias et al.   CROP SCIENCE

pSBVB: A Versatile Simulation Tool To Evaluate Genomic Selection in Polyploid Species

(2018) Laura Zingaretti et al.   G3-Genes Genomes Genetics

Multi-trait genomic prediction for nitrogen response indices in tropical maize hybrids

(2017) Danilo Hottis Lyra et al.   MOLECULAR BREEDING

Target enrichment sequencing in cultivated peanut (Arachis hypogaea L.) using probes designed from transcript sequences

(2017) Ze Peng et al.   MOLECULAR GENETICS AND GENOMICS

Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing

(2017) Elsa Sverrisdóttir et al.   THEORETICAL AND APPLIED GENETICS

Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum

(2017) Samuel B. Fernandes et al.   THEORETICAL AND APPLIED GENETICS

Automated tetraploid genotype calling by hierarchical clustering

(2017) Cari A. Schmitz Carley et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

Genomic-Enabled Prediction in Maize Using Kernel Models with Genotype × Environment Interaction

(2017) Massaine Bandeira e Souza et al.   G3-Genes Genomes Genetics

Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits

(2017) Elisa Biazzi et al.   PLoS One

A Parthenogenesis Gene Candidate and Evidence for Segmental Allopolyploidy in Apomictic Brachiaria decumbens

(2016) M. Worthington et al.   GENETICS

The contribution of dominance to phenotype prediction in a pine breeding and simulated population

(2016) J E de Almeida Filho et al.   HEREDITY

Inclusion of Dominance Effects in the Multivariate GBLUP Model

(2016) Jhonathan Pedroso Rigal dos Santos et al.   PLoS One

Animal performance and sward characteristics of two cultivars of Brachiaria brizantha (BRS Paiaguás and BRS Piatã)

(2016) Valéria Pacheco Batista Euclides et al.   REVISTA BRASILEIRA DE ZOOTECNIA-BRAZILIAN JOURNAL OF ANIMAL SCIENCE

Estimate of genetic parameters in Brachiaria decumbens hybrids

(2016) Filipe Inácio Matias et al.   Crop Breeding and Applied Biotechnology

Software for Genome-Wide Association Studies in Autopolyploids and Its Application to Potato

(2016) Umesh R. Rosyara et al.   Plant Genome

Natural Allelic Variations in Highly Polyploidy Saccharum Complex

(2016) Jian Song et al.   Frontiers in Plant Science

Accuracy of genomic selection for alfalfa biomass yield in different reference populations

(2015) Paolo Annicchiarico et al.   BMC GENOMICS

Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa

(2015) Nahla V Bassil et al.   BMC GENOMICS

Assessment of Genetic Heterogeneity in Structured Plant Populations Using Multivariate Whole-Genome Regression Models

(2015) C. Lehermeier et al.   GENETICS

Multiple-trait- and selection indices-genomic predictions for grain yield and protein content in rye for feeding purposes

(2015) Albert Wilhelm Schulthess et al.   THEORETICAL AND APPLIED GENETICS

Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model

(2015) Marco Lopez-Cruz et al.   G3-Genes Genomes Genetics

Genomic Prediction of Biomass Yield in Two Selection Cycles of a Tetraploid Alfalfa Breeding Population

(2015) Xuehui Li et al.   Plant Genome

Estimation of genetic parameters and selection of Brachiaria humidicola progenies using a selection index

(2015) Ulisses José de Figueiredo et al.   Crop Breeding and Applied Biotechnology

Comparison of single-trait and multiple-trait genomic prediction models

(2014) Gang Guo et al.   BMC GENETICS

Genomic selection: genome-wide prediction in plant improvement

(2014) Zeratsion Abera Desta et al.   TRENDS IN PLANT SCIENCE

The value of improved pastures to Brazilian beef production

(2014) Liana Jank et al.   Crop & Pasture Science

Genomic Selection in Forage Breeding: Accuracy and Methods

(2013) Rosangela Maria Simeão Resende et al.   CROP SCIENCE

On the Additive and Dominant Variance and Covariance of Individuals Within the Genomic Selection Scope

(2013) Z. G. Vitezica et al.   GENETICS

Prospects for genomic selection in forage plant species

(2013) Benjamin J. Hayes et al.   PLANT BREEDING

Linkage Analysis and QTL Mapping Using SNP Dosage Data in a Tetraploid Potato Mapping Population

(2013) Christine A. Hackett et al.   PLoS One

A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato

(2013) Jan G. A. M. L. Uitdewilligen et al.   PLoS One

Experimental assessment of the accuracy of genomic selection in sugarcane

(2013) M. Gouy et al.   THEORETICAL AND APPLIED GENETICS

Does genomic selection have a future in plant breeding?

(2013) Elisabeth Jonas et al.   TRENDS IN BIOTECHNOLOGY

Accuracy of Genomewide Selection for Different Traits with Constant Population Size, Heritability, and Number of Markers

(2013) Emily Combs et al.   Plant Genome

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Multiple-Trait Genomic Selection Methods Increase Genetic Value Prediction Accuracy

(2012) Yi Jia et al.   GENETICS

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Genomic Prediction in Animals and Plants: Simulation of Data, Validation, Reporting, and Benchmarking

(2012) H. D. Daetwyler et al.   GENETICS

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids

(2012) Oliver Serang et al.   PLoS One

Morphogenesis in guinea grass pastures under rotational grazing strategies

(2012) Denise Baptaglin Montagner et al.   REVISTA BRASILEIRA DE ZOOTECNIA-BRAZILIAN JOURNAL OF ANIMAL SCIENCE

Comparison Between Linear and Non-parametric Regression Models for Genome-Enabled Prediction in Wheat

(2012) Paulino Pérez-Rodríguez et al.   G3-Genes Genomes Genetics

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Genotype calling in tetraploid species from bi-allelic marker data using mixture models

(2011) Roeland E Voorrips et al.   BMC BIOINFORMATICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Evaluation of genome-wide selection efficiency in maize nested association mapping populations

(2011) Zhigang Guo et al.   THEORETICAL AND APPLIED GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Increased accuracy of artificial selection by using the realized relationship matrix

(2009) B. J. HAYES et al.   Genetics Research

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE