Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa
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Title
Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa
Authors
Keywords
<em class=EmphasisTypeItalic >Fragaria</em>, Genotyping array, Plant breeding, Polyploidy, Strawberry, Single nucleotide polymorphism, Reduced ploidy
Journal
BMC GENOMICS
Volume 16, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-03-06
DOI
10.1186/s12864-015-1310-1
References
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- (2014) Terrence J. Frett et al. Tree Genetics & Genomes
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- (2013) Eric CH Chen et al. BMC BIOINFORMATICS
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- (2013) Satish Kumar et al. BMC GENOMICS
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- (2013) Carolina Klagges et al. PLoS One
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- (2013) Sara Montanari et al. PLoS One
- A High-Density SNP Map for Accurate Mapping of Seed Fibre QTL in Brassica napus L
- (2013) Liezhao Liu et al. PLoS One
- Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars
- (2013) C. R. Cavanagh et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ‘Schmidt's Antonovka’ is identical to ‘Common Antonovka’, an apple cultivar widely used in Russia in breeding for biotic and abiotic stresses
- (2013) Anna Pikunova et al. Tree Genetics & Genomes
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- (2012) Bo Liu et al. BMC PLANT BIOLOGY
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Rapid, Repeated, and Clustered Loss of Duplicate Genes in Allopolyploid Plant Populations of Independent Origin
- (2012) Richard J.A. Buggs et al. CURRENT BIOLOGY
- Genomic asymmetry in allopolyploid plants: wheat as a model
- (2012) M. Feldman et al. JOURNAL OF EXPERIMENTAL BOTANY
- Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing
- (2012) Wambui Njuguna et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- An Ancient Duplication of Apple MYB Transcription Factors Is Responsible for Novel Red Fruit-Flesh Phenotypes
- (2012) D. Chagne et al. PLANT PHYSIOLOGY
- Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple
- (2012) David Chagné et al. PLoS One
- Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm
- (2012) Ignazio Verde et al. PLoS One
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- (2012) Satish Kumar et al. PLoS One
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- (2012) Kimberly J. Felcher et al. PLoS One
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- (2012) Cameron Peace et al. PLoS One
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- (2012) Nannan Yang et al. Tree Genetics & Genomes
- Genetic dissection of aroma volatile compounds from the essential oil of peach fruit: QTL analysis and identification of candidate genes using dense SNP maps
- (2012) Iban Eduardo et al. Tree Genetics & Genomes
- Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species
- (2011) J. W. VAN OOIJEN Genetics Research
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
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- (2011) Sukhjiwan Kaur et al. PLANT BIOTECHNOLOGY JOURNAL
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- (2010) Vladimir Shulaev et al. NATURE GENETICS
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- (2010) Riccardo Velasco et al. NATURE GENETICS
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- (2009) H. Li et al. BIOINFORMATICS
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- (2009) H. Li et al. BIOINFORMATICS
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- (2009) D. J. Sargent et al. MOLECULAR BREEDING
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- (2009) Lex E. Flagel et al. NEW PHYTOLOGIST
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