Accuracy of genomic selection for alfalfa biomass yield in different reference populations

Alfalfa forage yield and leaf/stem ratio: narrow-sense heritability, genetic correlation, and parent selection procedures

(2015) P. Annicchiarico   EUPHYTICA

Genomic Prediction of Biomass Yield in Two Selection Cycles of a Tetraploid Alfalfa Breeding Population

(2015) Xuehui Li et al.   Plant Genome

Growth environment, harvest management and germplasm impacts on potential ethanol and crude protein yield in alfalfa

(2014) JoAnn F.S. Lamb et al.   BIOMASS & BIOENERGY

Achievements and Challenges in Improving Temperate Perennial Forage Legumes

(2014) Paolo Annicchiarico et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Genomic-enabled prediction with classification algorithms

(2014) L Ornella et al.   HEREDITY

Genome-wide prediction of three important traits in bread wheat

(2014) Gilles Charmet et al.   MOLECULAR BREEDING

Development of an Alfalfa SNP Array and Its Use to Evaluate Patterns of Population Structure and Linkage Disequilibrium

(2014) Xuehui Li et al.   PLoS One

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Physiological and morphological traits associated with adaptation of lucerne (Medicago sativa) to severely drought-stressed and to irrigated environments

(2012) P. Annicchiarico et al.   ANNALS OF APPLIED BIOLOGY

A comparison of statistical methods for genomic selection in a mice population

(2012) Haroldo HR Neves et al.   BMC GENETICS

Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing

(2012) Xuehui Li et al.   BMC GENOMICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Applied Genetics and Genomics in Alfalfa Breeding

(2012) Xuehui Li et al.   Agronomy-Basel

MissForest--non-parametric missing value imputation for mixed-type data

(2011) D. J. Stekhoven et al.   BIOINFORMATICS

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysis

(2011) Yuanhong Han et al.   BMC GENOMICS

Genomic Selection Accuracy for Grain Quality Traits in Biparental Wheat Populations

(2011) Elliot L. Heffner et al.   CROP SCIENCE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Association Mapping of Biomass Yield and Stem Composition in a Tetraploid Alfalfa Breeding Population

(2011) Xuehui Li et al.   Plant Genome

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Adaptation of landrace and variety germplasm and selection strategies for lucerne in the Mediterranean basin

(2010) P. Annicchiarico et al.   FIELD CROPS RESEARCH

Population Structure and Cryptic Relatedness in Genetic Association Studies

(2010) William Astle et al.   STATISTICAL SCIENCE

Association of a CONSTANS-LIKE gene to flowering and height in autotetraploid alfalfa

(2010) Doris Herrmann et al.   THEORETICAL AND APPLIED GENETICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Empirical characterization of random forest variable importance measures

(2007) Kellie J. Archer et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS