The Effect of Disease and Season to Hepatopancreas and Intestinal Mycobiota of Litopenaeus vannamei

Progress in the gut microbiota in exploring shrimp disease pathogenesis and incidence

(2018) Jinbo Xiong   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fecal Bacteriome and Mycobiome in Bats with Diverse Diets in South China

(2018) Juan Li et al.   CURRENT MICROBIOLOGY

Characterizing the bacterial microbiota in different gastrointestinal tract segments of the Bactrian camel

(2018) Jing He et al.   Scientific Reports

Microbiota assemblages of water, sediment, and intestine and their associations with environmental factors and shrimp physiological health

(2018) Fei Huang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Response of host-bacterial colonization in shrimp to developmental stage, environment and disease

(2018) Jinbo Xiong et al.   MOLECULAR ECOLOGY

A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota

(2018) Fernanda Cornejo-Granados et al.   PeerJ

Integrating gut microbiota immaturity and disease-discriminatory taxa to diagnose the initiation and severity of shrimp disease

(2017) Jinbo Xiong et al.   ENVIRONMENTAL MICROBIOLOGY

The Fungal Mycobiome and Its Interaction with Gut Bacteria in the Host

(2017) Qi Sam et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Rhizobium Impacts on Seed Productivity, Quality, and Protection of Pisum sativum upon Disease Stress Caused by Didymella pinodes: Phenotypic, Proteomic, and Metabolomic Traits

(2017) Nima Ranjbar Sistani et al.   Frontiers in Plant Science

Early gut mycobiota and mother-offspring transfer

(2017) Kasper Schei et al.   Microbiome

Habitat and indigenous gut microbes contribute to the plasticity of gut microbiome in oriental river prawn during rapid environmental change

(2017) Cheng-Yu Chen et al.   PLoS One

Fungal community succession and major components change during manufacturing process of Fu brick tea

(2017) Qin Li et al.   Scientific Reports

Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions

(2017) Fernanda Cornejo-Granados et al.   Scientific Reports

Engyodontochones, Antibiotic Polyketides from the Marine Fungus Engyodontium album Strain LF069

(2016) Bin Wu et al.   CHEMISTRY-A EUROPEAN JOURNAL

De novo assembly and transcriptome analysis of osmoregulation in Litopenaeus vannamei under three cultivated conditions with different salinities

(2016) Dan Zhang et al.   GENE

Fungal microbiota dysbiosis in IBD

(2016) Harry Sokol et al.   GUT

Killer toxin from several food-derived Debaryomyces hansenii strains effective against pathogenic Candida yeasts

(2016) Nabaraj Banjara et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Penicillium pedernalense sp. nov., isolated from whiteleg shrimp heads waste compost

(2016) Federico Laich et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Pulmonary Th17 Antifungal Immunity Is Regulated by the Gut Microbiome

(2016) Jeremy P. McAleer et al.   JOURNAL OF IMMUNOLOGY

Bacterial dynamics in intestines of the black tiger shrimp and the Pacific white shrimp during Vibrio harveyi exposure

(2016) Wanilada Rungrassamee et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Diet–microbiota interactions as moderators of human metabolism

(2016) Justin L. Sonnenburg et al.   NATURE

Fungi in the healthy human gastrointestinal tract

(2016) Heather E. Hallen-Adams et al.   Virulence

The Gut Microbiota Modulates Energy Metabolism in the Hibernating Brown Bear Ursus arctos

(2016) Felix Sommer et al.   Cell Reports

Clarification on Host Range of Didymella pinodes the Causal Agent of Pea Ascochyta Blight

(2016) Eleonora Barilli et al.   Frontiers in Plant Science

Changes in intestinal bacterial communities are closely associated with shrimp disease severity

(2015) Jinbo Xiong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A novel report of fungal pathogen Aspergillus awamori causing black gill infection on Litopenaeus vannamei (pacific white shrimp)

(2015) Velmurugan Karthikeyan et al.   AQUACULTURE

Immune–microbiota interactions in health and disease

(2015) Noah W. Palm et al.   CLINICAL IMMUNOLOGY

Development of a multiplex real-time PCR method for simultaneous detection of Vibrio parahaemolyticus, Listeria monocytogenes and Salmonella spp. in raw shrimp

(2015) Zhaohuan Zhang et al.   FOOD CONTROL

Mycotic keratitis due to Engyodontium album: First case report from India

(2015) DC Thamke et al.   Indian Journal of Medical Microbiology

Phaeohyphomycosis Caused by a Novel Species, Pseudochaetosphaeronema martinelli

(2015) Sarah A. Ahmed et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Fungal Dysbiosis in Mucosa-associated Microbiota of Crohn’s Disease Patients

(2015) Giuseppina Liguori et al.   Journal of Crohns & Colitis

Rapid Change of Microbiota Diversity in the Gut but Not the Hepatopancreas During Gonadal Development of the New Shrimp Model Neocaridina denticulata

(2015) Man Kit Cheung et al.   MARINE BIOTECHNOLOGY

Aquarium microbiome response to ninety-percent system water change: Clues to microbiome management

(2015) William Van Bonn et al.   ZOO BIOLOGY

The Bamboo-Eating Giant Panda Harbors a Carnivore-Like Gut Microbiota, with Excessive Seasonal Variations

(2015) Zhengsheng Xue et al.   mBio

Obesity changes the human gut mycobiome

(2015) M. Mar Rodríguez et al.   Scientific Reports

The Dynamic Distribution of Porcine Microbiota across Different Ages and Gastrointestinal Tract Segments

(2015) Wenjing Zhao et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Ecological theory as a foundation to control pathogenic invasion in aquaculture

(2014) Peter De Schryver et al.   ISME Journal

Variaciones estacionales en el tamaño corporal y dieta de la estrella de mar Astropecten marginatus (Paxillosida, Astropectinidae) frente a la costa de Paraná, sur de Brasil

(2014) Pablo D. B. Guilherme   REVISTA DE BIOLOGIA TROPICAL

Oral Mycobiome Analysis of HIV-Infected Patients: Identification of Pichia as an Antagonist of Opportunistic Fungi

(2014) Pranab K. Mukherjee et al.   PLoS Pathogens

Microbiota from Litopenaeus vannamei: digestive tract microbial community of Pacific white shrimp (Litopenaeus vannamei)

(2014) Jaqueline Tzuc et al.   SpringerPlus

ESCMID† and ECMM‡ joint clinical guidelines for the diagnosis and management of rare invasive yeast infections

(2013) M.C. Arendrup et al.   CLINICAL MICROBIOLOGY AND INFECTION

Dysbiosis of Gut Fungal Microbiota is Associated With Mucosal Inflammation in Crohn’s Disease

(2013) Qiurong Li et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Virulence ofCurvulariain a murine model

(2013) Katihuska Paredes et al.   MYCOSES

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

The emerging world of the fungal microbiome

(2013) Gary B. Huffnagle et al.   TRENDS IN MICROBIOLOGY

Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags

(2012) Yu Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

The Role of Anti(myco)bacterial Interventions in the Management of IBD: Is There Evidence at All?

(2012) Guillaume P. Pineton de Chambrun et al.   DIGESTIVE DISEASES

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Interactions Between the Microbiota and the Immune System

(2012) L. V. Hooper et al.   SCIENCE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Culturable fungal diversity of shrimp Litopenaeus vannamei boone from breeding farms in Brazil

(2011) Lidiane Roberta Cruz da Silva et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY