A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota

Intestinal bacterial signatures of white feces syndrome in shrimp

(2018) Dongwei Hou et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

In vitro and in vivo potential probiotic activity of Bacillus subtilis and Shewanella algae for use in Litopenaeus vannamei rearing

(2018) Juliana A. Interaminense et al.   AQUACULTURE

A comparison of bioinformatic approaches for 16S rRNA gene profiling of food bacterial microbiota

(2018) Francesca De Filippis et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Integrating gut microbiota immaturity and disease-discriminatory taxa to diagnose the initiation and severity of shrimp disease

(2017) Jinbo Xiong et al.   ENVIRONMENTAL MICROBIOLOGY

Response of gut health and microbiota to sulfide exposure in Pacific white shrimp Litopenaeus vannamei

(2017) Yantong Suo et al.   FISH & SHELLFISH IMMUNOLOGY

Coupling metagenomics with cultivation to select host-specific probiotic micro-organisms for subtropical aquaculture

(2017) J. Cui et al.   JOURNAL OF APPLIED MICROBIOLOGY

Intestinal Microbiota of White Shrimp Penaeus vannamei Under Intensive Cultivation Conditions in Ecuador

(2017) Oreste Gainza et al.   MICROBIAL ECOLOGY

Diversity and characterization of bacteria associated with the deep-sea hydrothermal vent crab Austinograea sp. comparing with those of two shallow-water crabs by 16S ribosomal DNA analysis

(2017) Na Zhang et al.   PLoS One

Environmental Factors Shape Water Microbial Community Structure and Function in Shrimp Cultural Enclosure Ecosystems

(2017) Dongwei Hou et al.   Frontiers in Microbiology

Bacterial Community Associated with Healthy and Diseased Pacific White Shrimp (Litopenaeus vannamei) Larvae and Rearing Water across Different Growth Stages

(2017) Yanfen Zheng et al.   Frontiers in Microbiology

Composition, diversity and function of intestinal microbiota in pacific white shrimp (Litopenaeus vannamei) at different culture stages

(2017) Shenzheng Zeng et al.   PeerJ

Meta-analysis To Define a Core Microbiota in the Swine Gut

(2017) Devin B. Holman et al.   mSystems

Habitat and indigenous gut microbes contribute to the plasticity of gut microbiome in oriental river prawn during rapid environmental change

(2017) Cheng-Yu Chen et al.   PLoS One

Change in microbial community in landfill refuse contaminated with antibiotics facilitates denitrification more than the increase in ARG over long-term

(2017) Dong Wu et al.   Scientific Reports

Microbiome Dynamics in a Shrimp Grow-out Pond with Possible Outbreak of Acute Hepatopancreatic Necrosis Disease

(2017) Wei-Yu Chen et al.   Scientific Reports

Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions

(2017) Fernanda Cornejo-Granados et al.   Scientific Reports

Gut microbial communities associated with the molting stages of the giant freshwater prawn Macrobrachium rosenbergii

(2016) Eleni Mente et al.   AQUACULTURE

Response of gut microbiota to salinity change in two euryhaline aquatic animals with reverse salinity preference

(2016) Meiling Zhang et al.   AQUACULTURE

Comparison of cultivable bacterial communities associated with Pacific white shrimp (Litopenaeus vannamei) larvae at different health statuses and growth stages

(2016) Yanfen Zheng et al.   AQUACULTURE

Influence of different dietary carbohydrate sources on the growth and intestinal microbiota of Litopenaeus vannamei at low salinity

(2016) F. Qiao et al.   AQUACULTURE NUTRITION

Effects of dietary supplementation of Lactobacillus rhamnosus or/and Lactococcus lactis on the growth, gut microbiota and immune responses of red sea bream, Pagrus major

(2016) Mahmoud A.O. Dawood et al.   FISH & SHELLFISH IMMUNOLOGY

Bacterial dynamics in intestines of the black tiger shrimp and the Pacific white shrimp during Vibrio harveyi exposure

(2016) Wanilada Rungrassamee et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Microbiome analysis and detection of pathogenic bacteria of Penaeus monodon from Jakarta Bay and Bali

(2016) Vincensius S.P. Oetama et al.   MARINE POLLUTION BULLETIN

The Underlying Ecological Processes of Gut Microbiota Among Cohabitating Retarded, Overgrown and Normal Shrimp

(2016) Jinbo Xiong et al.   MICROBIAL ECOLOGY

First Comparative Analysis of the Community Structures and Carbon Metabolic Pathways of the Bacteria Associated with Alvinocaris longirostris in a Hydrothermal Vent of Okinawa Trough

(2016) Qing-lei Sun et al.   PLoS One

Effect of dietary components on the gut microbiota of aquatic animals. A never-ending story?

(2015) E. Ringø et al.   AQUACULTURE NUTRITION

Rapid Change of Microbiota Diversity in the Gut but Not the Hepatopancreas During Gonadal Development of the New Shrimp Model Neocaridina denticulata

(2015) Man Kit Cheung et al.   MARINE BIOTECHNOLOGY

The opportunistic marine pathogenVibrio parahaemolyticusbecomes virulent by acquiring a plasmid that expresses a deadly toxin

(2015) Chung-Te Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome

(2015) Shirley Bikel et al.   Computational and Structural Biotechnology Journal

Effects of Host Phylogeny and Habitats on Gut Microbiomes of Oriental River Prawn (Macrobrachium nipponense)

(2015) Tzong-Der Tzeng et al.   PLoS One

The application of bacterial indicator phylotypes to predict shrimp health status

(2014) Jinbo Xiong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of the intestinal microbiota in Pacific white shrimp, Litopenaeus vannamei, fed diets with different lipid sources

(2014) Meiling Zhang et al.   AQUACULTURE

Changes in the intestinal bacterial community during the growth of white shrimp,Litopenaeus vannamei

(2014) Zhaobin Huang et al.   AQUACULTURE RESEARCH

Characterization of Intestinal Bacteria in Wild and Domesticated Adult Black Tiger Shrimp (Penaeus monodon)

(2014) Wanilada Rungrassamee et al.   PLoS One

Early Mortality Syndrome Outbreaks: A Microbial Management Issue in Shrimp Farming?

(2014) Peter De Schryver et al.   PLoS Pathogens

Bacterioplankton assemblages as biological indicators of shrimp health status

(2013) Demin Zhang et al.   ECOLOGICAL INDICATORS

Meta-analyses of studies of the human microbiota

(2013) C. A. Lozupone et al.   GENOME RESEARCH

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Bacterial Population in Intestines of the Black Tiger Shrimp (Penaeus monodon) under Different Growth Stages

(2013) Wanilada Rungrassamee et al.   PLoS One

Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags

(2012) Yu Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Rethinking microbial diversity analysis in the high throughput sequencing era

(2011) Leandro N. Lemos et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Microbial diversity associated with the hydrothermal shrimpRimicaris exoculatagut and occurrence of a resident microbial community

(2009) Lucile Durand et al.   FEMS MICROBIOLOGY ECOLOGY