Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease

The oral microbiota – a mechanistic role for systemic diseases

(2018) G. Jia et al.   BRITISH DENTAL JOURNAL

Propagating annotations of molecular networks using in silico fragmentation

(2018) Ricardo R. da Silva et al.   PLoS Computational Biology

Molecular Basis of Gut Microbiome-Associated Colorectal Cancer: A Synthetic Perspective

(2017) Alan R. Healy et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Antibiotics and specialized metabolites from the human microbiota

(2017) Walaa K. Mousa et al.   NATURAL PRODUCT REPORTS

Commensal bacteria make GPCR ligands that mimic human signalling molecules

(2017) Louis J. Cohen et al.   NATURE

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

(2017) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Quorum Sensing Regulation of Competence and Bacteriocins in Streptococcus pneumoniae and mutans

(2017) Erin Shanker et al.   Genes

Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbiota in patients with periodontitis and dental caries

(2017) Daniel Belstrøm et al.   npj Biofilms and Microbiomes

Trends in Oral Health by Poverty Status as Measured by Healthy People 2010 Objectives

(2017) Bruce A. Dye et al.   PUBLIC HEALTH REPORTS

The oral microbiome – an update for oral healthcare professionals

(2016) M. Kilian et al.   BRITISH DENTAL JOURNAL

Aryl Polyenes, a Highly Abundant Class of Bacterial Natural Products, Are Functionally Related to Antioxidative Carotenoids

(2016) Tim A. Schöner et al.   CHEMBIOCHEM

Human commensals producing a novel antibiotic impair pathogen colonization

(2016) Alexander Zipperer et al.   NATURE

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy

(2016) Yannick Djoumbou Feunang et al.   Journal of Cheminformatics

MetFrag relaunched: incorporating strategies beyond in silico fragmentation

(2016) Christoph Ruttkies et al.   Journal of Cheminformatics

Genome mining unveils widespread natural product biosynthetic capacity in human oral microbe Streptococcus mutans

(2016) Liwei Liu et al.   Scientific Reports

Intermicrobial Interactions as a Driver for Community Composition and Stratification of Oral Biofilms

(2015) Nicholas S. Jakubovics   JOURNAL OF MOLECULAR BIOLOGY

Minimum Information about a Biosynthetic Gene cluster

(2015) Marnix H Medema et al.   Nature Chemical Biology

Small molecules from the human microbiota

(2015) M. S. Donia et al.   SCIENCE

Solving the etiology of dental caries

(2015) Aurea Simón-Soro et al.   TRENDS IN MICROBIOLOGY

Dynamic Changes in the Subgingival Microbiome and Their Potential for Diagnosis and Prognosis of Periodontitis

(2015) Baochen Shi et al.   mBio

Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis

(2015) Susan Yost et al.   Genome Medicine

Transcriptomic analysis of three Veillonella spp. present in carious dentine and in the saliva of caries-free individuals

(2015) Thuy Do et al.   Frontiers in Cellular and Infection Microbiology

Comparison of Oral Microbial Profiles between Children with Severe Early Childhood Caries and Caries-Free Children Using the Human Oral Microbe Identification Microarray

(2015) Chen Ma et al.   PLoS One

Bacillaene and Sporulation Protect Bacillus subtilis from Predation by Myxococcus xanthus

(2014) Susanne Müller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters

(2014) Peter Cimermancic et al.   CELL

A Systematic Analysis of Biosynthetic Gene Clusters in the Human Microbiome Reveals a Common Family of Antibiotics

(2014) Mohamed S. Donia et al.   CELL

Specialized Metabolites from the Microbiome in Health and Disease

(2014) Gil Sharon et al.   Cell Metabolism

The oral microbiome and the immunobiology of periodontal disease and caries

(2014) Massimo Costalonga et al.   IMMUNOLOGY LETTERS

Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis

(2014) Ana E Duran-Pinedo et al.   ISME Journal

Pristinamycin: old drug, new tricks?

(2014) E. C. Cooper et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

cAMP Signaling Affects Irreversible Attachment During Biofilm Formation by Pseudomonas aeruginosa PAO1

(2014) Kaori Ono et al.   MICROBES AND ENVIRONMENTS

Metatranscriptomics of the Human Oral Microbiome during Health and Disease

(2014) P. Jorth et al.   mBio

Functional expression of dental plaque microbiota

(2014) Scott N. Peterson et al.   Frontiers in Cellular and Infection Microbiology

Detecting Sequence Homology at the Gene Cluster Level with MultiGeneBlast

(2013) Marnix H. Medema et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic Treg Cell Homeostasis

(2013) P. M. Smith et al.   SCIENCE

Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease

(2013) Jinfeng Wang et al.   Scientific Reports

Targeting the bacteria–host interface

(2013) Anne Marie Krachler et al.   Virulence

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

The oral metagenome in health and disease

(2011) Pedro Belda-Ferre et al.   ISME Journal

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

The Human Oral Microbiome

(2010) F. E. Dewhirst et al.   JOURNAL OF BACTERIOLOGY

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

(2010) T. Chen et al.   Database-The Journal of Biological Databases and Curation

How Sweet it is! Cell Wall Biogenesis and Polysaccharide Capsule Formation inCryptococcus neoformans

(2009) Tamara Lea Doering   Annual Review of Microbiology

Bacteria of Dental Caries in Primary and Permanent Teeth in Children and Young Adults

(2008) J. A. Aas et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A microbial symbiosis factor prevents intestinal inflammatory disease

(2008) Sarkis K. Mazmanian et al.   NATURE