Integration of mRNA and miRNA Analysis Reveals the Molecular Mechanism Underlying Salt and Alkali Stress Tolerance in Tobacco

Molecular analysis of a novel alkaline metal salt (NaCl)-responsive WRKY transcription factor gene IlWRKY1 from the halophyte Iris lactea var. chinensis

(2018) Jun Tang et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Genome-wide identification and characterization of SPL transcription factor family and their evolution and expression profiling analysis in cotton

(2018) Caiping Cai et al.   Scientific Reports

miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79

(2018) Ruimin Gao et al.   Frontiers in Plant Science

ABC Transporters in Dynamic Macromolecular Assemblies

(2018) Simon Trowitzsch et al.   JOURNAL OF MOLECULAR BIOLOGY

Transcriptome Analysis of Gossypium hirsutum L. Reveals Different Mechanisms among NaCl, NaOH and Na2CO3 Stress Tolerance

(2018) Binglei Zhang et al.   Scientific Reports

Genome-Wide Identification of microRNAs in Response to Salt/Alkali Stress in Medicago truncatula through High-Throughput Sequencing

(2018) Chunyu Cao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

miR156/SPL9 Regulates Reactive Oxygen Species Accumulation and Immune Response in Arabidopsis thaliana

(2018) Yin Hongbiao et al.   PHYTOPATHOLOGY

Functional identification of a rice trehalase gene involved in salt stress tolerance

(2018) M. Obaidul Islam et al.   GENE

Effect of salt-stress on gene expression in citrus roots revealed by RNA-seq

(2017) Rangjin Xie et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Elucidating the molecular mechanisms mediating plant salt-stress responses

(2017) Yongqing Yang et al.   NEW PHYTOLOGIST

A Novel miRNA Sponge Form Efficiently Inhibits the Activity of miR393 and Enhances the Salt Tolerance and ABA Insensitivity in Arabidopsis thaliana

(2017) Ruicai Long et al.   PLANT MOLECULAR BIOLOGY REPORTER

An Insight into microRNA156 Role in Salinity Stress Responses of Alfalfa

(2017) Muhammad Arshad et al.   Frontiers in Plant Science

Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly

(2017) Halise B. Cagirici et al.   Frontiers in Plant Science

Identification of Salt Tolerance-related microRNAs and Their Targets in Maize (Zea mays L.) Using High-throughput Sequencing and Degradome Analysis

(2017) Rong Fu et al.   Frontiers in Plant Science

Genome-Wide Identification and Characterization of Salinity Stress-Responsive miRNAs in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides)

(2017) Kewei Feng et al.   Genes

Genome-wide identification and characterization of aquaporin gene family in Beta vulgaris

(2017) Weilong Kong et al.   PeerJ

Combined analysis of mRNA and miRNA identifies dehydration and salinity responsive key molecular players in citrus roots

(2017) Rangjin Xie et al.   Scientific Reports

MicroRNA and target gene responses to salt stress in grafted cucumber seedlings

(2016) Yansu Li et al.   ACTA PHYSIOLOGIAE PLANTARUM

Identification and characterization of miRNAs and targets in flax (Linum usitatissimum) under saline, alkaline, and saline-alkaline stresses

(2016) Ying Yu et al.   BMC PLANT BIOLOGY

microRNAs differentially modulated in response to heat and drought stress in durum wheat cultivars with contrasting water use efficiency

(2016) Lorenzo Giusti et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Cross-tolerance to biotic and abiotic stresses in plants: a focus on resistance to aphid infestation

(2016) Christine H. Foyer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gel-free/label-free proteomic analysis of developing rice grains under heat stress

(2016) Tarinee Timabud et al.   Journal of Proteomics

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Genetic regulation of salt stress tolerance revealed by RNA-Seq in cotton diploid wild species, Gossypium davidsonii

(2016) Feng Zhang et al.   Scientific Reports

Identification of novel and salt-responsive miRNAs to explore miRNA-mediated regulatory network of salt stress response in radish (Raphanus sativus L.)

(2015) Xiaochuan Sun et al.   BMC GENOMICS

Genome-wide identification of chromium stress-responsive micro RNAs and their target genes in tobacco (Nicotiana tabacum) roots

(2015) Syed Asad Hussain Bukhari et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

miRNA-based drought regulation in wheat

(2015) Guray Akdogan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Plant miRNAs: biogenesis, organization and origins

(2015) Hikmet Budak et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Ionic and photosynthetic homeostasis in quinoa challenged by salinity and drought – mechanisms of tolerance

(2015) Fatemeh Razzaghi et al.   FUNCTIONAL PLANT BIOLOGY

miR408 overexpression causes increased drought tolerance in chickpea

(2015) Mortaza Hajyzadeh et al.   GENE

Melatonin delays leaf senescence and enhances salt stress tolerance in rice

(2015) Chengzhen Liang et al.   JOURNAL OF PINEAL RESEARCH

Generating salt-tolerant Nicotiana tabacum and identification ofstress-responsive miRNAs in transgenics

(2015) Ferhunde AYSİN et al.   TURKISH JOURNAL OF BOTANY

Comparison of Leaf Sheath Transcriptome Profiles with Physiological Traits of Bread Wheat Cultivars under Salinity Stress

(2015) Fuminori Takahashi et al.   PLoS One

Global Identification of MicroRNAs and Their Targets in Barley under Salinity Stress

(2015) Pingchuan Deng et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Proteus mirabilis alleviates zinc toxicity by preventing oxidative stress in maize (Zea mays) plants

(2014) Faisal Islam et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Genome-wide analysis of Water-stress-responsive microRNA expression profile in tobacco roots

(2014) Fuqiang Yin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Regulation of microRNA function in somatic stem cell proliferation and differentiation

(2014) Archana Shenoy et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Abiotic and biotic stress combinations

(2014) Nobuhiro Suzuki et al.   NEW PHYTOLOGIST

Small RNA deep sequencing identifies novel and salt-stress-regulated microRNAs from roots ofMedicago sativaandMedicago truncatula

(2014) Rui-Cai Long et al.   PHYSIOLOGIA PLANTARUM

miR824-Regulated AGAMOUS-LIKE16 Contributes to Flowering Time Repression in Arabidopsis

(2014) J.-Y. Hu et al.   PLANT CELL

miR482 Regulation of NBS-LRR Defense Genes during Fungal Pathogen Infection in Cotton

(2014) Qian-Hao Zhu et al.   PLoS One

The tobacco genome sequence and its comparison with those of tomato and potato

(2014) Nicolas Sierro et al.   Nature Communications

Mechanism of Salinity Tolerance in Plants: Physiological, Biochemical, and Molecular Characterization

(2014) Bhaskar Gupta et al.   International Journal of Genomics

Response of miRNAs and their targets to salt and drought stresses in cotton (Gossypium hirsutum L.)

(2013) Min Wang et al.   GENE

High-throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress

(2013) Fuliang Xie et al.   PLANT BIOTECHNOLOGY JOURNAL

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

(2012) Ming Wen et al.   BMC BIOINFORMATICS

The cytological changes of tobacco zygote and proembryo cells induced by beta-glucosyl Yariv reagent suggest the involvement of arabinogalactan proteins in cell division and cell plate formation

(2012) Miao Yu et al.   BMC PLANT BIOLOGY

Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)

(2012) She Tang et al.   BMC PLANT BIOLOGY

Gene expression profiling of soybean leaves and roots under salt, saline–alkali and drought stress by high-throughput Illumina sequencing

(2012) Xiu-Duo Fan et al.   GENE

A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research

(2012) Aureliano Bombarely et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

Overexpression of a Wheat Aquaporin Gene, TaAQP8, Enhances Salt Stress Tolerance in Transgenic Tobacco

(2012) Wei Hu et al.   PLANT AND CELL PHYSIOLOGY

New allelic variants found in key rice salt-tolerance genes: an association study

(2012) Sónia Negrão et al.   PLANT BIOTECHNOLOGY JOURNAL

Improving PacBio Long Read Accuracy by Short Read Alignment

(2012) Kin Fai Au et al.   PLoS One

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Salt and Drought Stresses Induce the Aberrant Expression of microRNA Genes in Tobacco

(2011) Taylor P. Frazier et al.   MOLECULAR BIOTECHNOLOGY

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Integrated Profiling of MicroRNAs and mRNAs: MicroRNAs Located on Xq27.3 Associate with Clear Cell Renal Cell Carcinoma

(2011) Liang Zhou et al.   PLoS One

Thioredoxin-regulated β-amylase (BAM1) triggers diurnal starch degradation in guard cells, and in mesophyll cells under osmotic stress

(2010) Concetta Valerio et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Small RNAs and developmental timing in plants

(2009) R Scott Poethig   CURRENT OPINION IN GENETICS & DEVELOPMENT

Potato Responds to Salt Stress by Increased Activity of Antioxidant Enzymes

(2009) Keyvan Aghaei et al.   Journal of Integrative Plant Biology

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Identification of cold-inducible microRNAs in plants by transcriptome analysis

(2008) X ZHOU et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Water Transport by Aquaporins in the Extant Plant Physcomitrella patens

(2008) D. Lienard et al.   PLANT PHYSIOLOGY

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA