Decoding microbial community intelligence through metagenomics for efficient wastewater treatment

Metagenomic exploration reveals a marked change in the river resistome and mobilome after treated wastewater discharges

(2018) Itziar Lekunberri et al.   ENVIRONMENTAL POLLUTION

Tools for Metagenomic Analysis at Wastewater Treatment Plants:Application to a Foaming Episode

(2018) Gretchen E. Rosso et al.   WATER ENVIRONMENT RESEARCH

Metagenomic Analysis of a Biphenyl-Degrading Soil Bacterial Consortium Reveals the Metabolic Roles of Specific Populations

(2018) Daniel Garrido-Sanz et al.   Frontiers in Microbiology

Microbial population shift caused by sulfamethoxazole in engineered-Soil Aquifer Treatment (e-SAT) system

(2017) Ashwinkumar P. Rudrashetti et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems

(2017) Mikkel Stokholm-Bjerregaard et al.   Frontiers in Microbiology

The impact of immigration on microbial community composition in full-scale anaerobic digesters

(2017) Rasmus H. Kirkegaard et al.   Scientific Reports

Characterization of three plant biomass-degrading microbial consortia by metagenomics- and metasecretomics-based approaches

(2016) Diego Javier Jiménez et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Degradation of crude oil and PAHs in iron–manganese concretions and sediment from the northern Baltic Sea

(2016) Anna Reunamo et al.   GEOMICROBIOLOGY JOURNAL

Control of occupational exposure to phenol in industrial wastewater treatment plant of a petroleum refinery in Alexandria, Egypt: An intervention application case study

(2016) Gehan R. Zaki et al.   JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL HYGIENE

Microbial succession in response to pollutants in batch-enrichment culture

(2016) Shuo Jiao et al.   Scientific Reports

Synergistic Processing of Biphenyl and Benzoate: Carbon Flow Through the Bacterial Community in Polychlorinated-Biphenyl-Contaminated Soil

(2016) Mary-Cathrine Leewis et al.   Scientific Reports

Genomics of high molecular weight plasmids isolated from an on-farm biopurification system

(2016) María C. Martini et al.   Scientific Reports

Comparative metagenomics demonstrating different degradative capacity of activated biomass treating hydrocarbon contaminated wastewater

(2015) Trilok Chandra Yadav et al.   BIORESOURCE TECHNOLOGY

Pesticides Analysis: Advantages of Increased Dimensionality in Gas Chromatography and Mass Spectrometry

(2015) Yada Nolvachai et al.   CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY

Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics

(2015) Rose S. Kantor et al.   ENVIRONMENTAL MICROBIOLOGY

Antimicrobial activity of Alcaligenes sp. HPC 1271 against multidrug resistant bacteria

(2015) Atya Kapley et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Insights from 20 years of bacterial genome sequencing

(2015) Miriam Land et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The activated sludge ecosystem contains a core community of abundant organisms

(2015) Aaron M Saunders et al.   ISME Journal

Salix purpurea Stimulates the Expression of Specific Bacterial Xenobiotic Degradation Genes in a Soil Contaminated with Hydrocarbons

(2015) Antoine P. Pagé et al.   PLoS One

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Shifts in microbial community in response to dissolved oxygen levels in activated sludge

(2014) Trilok Chandra Yadav et al.   BIORESOURCE TECHNOLOGY

Metagenomic analysis of oxygenases from activated sludge

(2014) Niti B. Jadeja et al.   BIORESOURCE TECHNOLOGY

Identification and monitoring of nitrification and denitrification genes in Klebsiella pneumoniae EGD-HP19-C for its ability to perform heterotrophic nitrification and aerobic denitrification

(2014) Rajesh R. Pal et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Mining and assessment of catabolic pathways in the metagenome of a common effluent treatment plant to induce the degradative capacity of biomass

(2013) Ravi P. More et al.   BIORESOURCE TECHNOLOGY

Taxonomic Profiling and Metagenome Analysis of a Microbial Community from a Habitat Contaminated with Industrial Discharges

(2013) Varun Shah et al.   MICROBIAL ECOLOGY

Prevalence of Antibiotic Resistance Genes and Bacterial Community Composition in a River Influenced by a Wastewater Treatment Plant

(2013) Elisabet Marti et al.   PLoS One

Pyrosequencing Analysis of Bacterial Diversity in 14 Wastewater Treatment Systems in China

(2012) Xiaohui Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales

(2011) Danilo Pérez-Pantoja et al.   ENVIRONMENTAL MICROBIOLOGY

CoMet—a web server for comparative functional profiling of metagenomes

(2011) Thomas Lingner et al.   NUCLEIC ACIDS RESEARCH

Achievements and new knowledge unraveled by metagenomic approaches

(2009) Carola Simon et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Diagnosis of Treatment Efficiency in Industrial Wastewater Treatment Plants: A Case Study at a Refinery ETP

(2009) Atya Kapley et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Assessment of microbial diversity in effluent treatment plants by culture dependent and culture independent approaches

(2008) Asha Rani et al.   BIORESOURCE TECHNOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

KEGG Atlas mapping for global analysis of metabolic pathways

(2008) S. Okuda et al.   NUCLEIC ACIDS RESEARCH