Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics

Characterisation of the complex microbial community associated with the ASTER™ thiocyanate biodegradation system

(2015) Robert J. Huddy et al.   MINERALS ENGINEERING

Evaluation of the ASTERTM process in the presence of suspended solids

(2015) Andries W. van Zyl et al.   MINERALS ENGINEERING

The environmental controls that govern the end product of bacterial nitrate respiration

(2014) B. Kraft et al.   SCIENCE

Two arginine residues in the substrate pocket predominantly control the substrate selectivity of thiocyanate hydrolase

(2013) Yasuaki Yamanaka et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the β-Carbonic Anhydrase Family Enzymes

(2013) Takahiro Ogawa et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Cloning and expression of a gene encoding a novel thermostable thiocyanate-degrading enzyme from a mesophilic alphaproteobacteria strain THI201

(2013) A. Hussain et al.   MICROBIOLOGY-SGM

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

Community and Proteomic Analysis of Methanogenic Consortia Degrading Terephthalate

(2012) Jer-Horng Wu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community

(2012) Laura A Hug et al.   BMC GENOMICS

Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization

(2012) I. Sharon et al.   GENOME RESEARCH

A critical review on destruction of thiocyanate in mining effluents

(2012) W. Douglas Gould et al.   MINERALS ENGINEERING

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The cytochrome bd respiratory oxygen reductases

(2011) Vitaliy B. Borisov et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Thioalkalivibrio sulfidiphilus sp. nov., a haloalkaliphilic, sulfur-oxidizing gammaproteobacterium from alkaline habitats

(2011) D. Y. Sorokin et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Convergent evolution in biosynthesis of cyanogenic defence compounds in plants and insects

(2011) Niels Bjerg Jensen et al.   Nature Communications

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Polyphasic bacterial community analysis of an aerobic activated sludge removing phenols and thiocyanate from coke plant effluent

(2010) Tamás Felföldi et al.   BIORESOURCE TECHNOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Expansion of ribosomally produced natural products: a nitrile hydratase- and Nif11-related precursor family

(2010) Daniel H Haft et al.   BMC BIOLOGY

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

(2010) Athanasios Lykidis et al.   ISME Journal

Crystal Structure of Sulfide:Quinone Oxidoreductase from Acidithiobacillus ferrooxidans: Insights into Sulfidotrophic Respiration and Detoxification

(2010) Maia M. Cherney et al.   JOURNAL OF MOLECULAR BIOLOGY

Cyanide degradation by Pseudomonas pseudoalcaligenes CECT5344 involves a malate : quinone oxidoreductase and an associated cyanide-insensitive electron transfer chain

(2010) V. M. Luque-Almagro et al.   MICROBIOLOGY-SGM

Eukaryotic nirK Genes Encoding Copper-Containing Nitrite Reductase: Originating from the Protomitochondrion?

(2009) S.-W. Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration

(2009) M. Marcia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new structure-based classification of sulfide:quinone oxidoreductases

(2009) Marco Marcia et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY

Characterization of the Pseudomonas pseudoalcaligenes CECT5344 Cyanase, an Enzyme That Is Not Essential for Cyanide Assimilation

(2008) V. M. Luque-Almagro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial nitrilases: versatile, spiral forming, industrial enzymes

(2008) R.N. Thuku et al.   JOURNAL OF APPLIED MICROBIOLOGY