Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales

Genomic analysis of the phenylacetyl-CoA pathway in Burkholderia xenovorans LB400

(2011) Marianna A. Patrauchan et al.   ARCHIVES OF MICROBIOLOGY

Phn and Nag-like dioxygenases metabolize polycyclic aromatic hydrocarbons in Burkholderia sp. C3

(2011) Panlada Tittabutr et al.   BIODEGRADATION

Phenylalanine induces Burkholderia cenocepacia phenylacetic acid catabolism through degradation to phenylacetyl-CoA in synthetic cystic fibrosis sputum medium

(2011) Harry Yudistira et al.   MICROBIAL PATHOGENESIS

Gentisate 1,2-dioxygenase, in the third naphthalene catabolic gene cluster of Polaromonas naphthalenivorans CJ2, has a role in naphthalene degradation

(2011) H. J. Lee et al.   MICROBIOLOGY-SGM

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Homogentisate and Homoprotocatechuate Central Pathways Are Involved in 3- and 4-Hydroxyphenylacetate Degradation by Burkholderia xenovorans LB400

(2011) Valentina Méndez et al.   PLoS One

Characterization of the Protocatechuate 4,5-Cleavage Pathway Operon in Comamonas sp. Strain E6 and Discovery of a Novel Pathway Gene

(2010) N. Kamimura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel aerobic benzene degrading microorganisms identified in three soils by stable isotope probing

(2010) Shuguang Xie et al.   BIODEGRADATION

Complete Genome Sequence of Burkholderia rhizoxinica, an Endosymbiont of Rhizopus microsporus

(2010) G. Lackner et al.   JOURNAL OF BACTERIOLOGY

Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida

(2010) Juan Nogales et al.   MOLECULAR MICROBIOLOGY

The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrader

(2010) Athanasios Lykidis et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid

(2010) Peter W. Harrison et al.   TRENDS IN MICROBIOLOGY

Direct Link between Toluene Degradation in Contaminated-Site Microcosms and a Polaromonas Strain

(2009) W. Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biphenyl-Metabolizing Bacteria in the Rhizosphere of Horseradish and Bulk Soil Contaminated by Polychlorinated Biphenyls as Revealed by Stable Isotope Probing

(2009) O. Uhlik et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of the Isophthalate Degradation Genes of Comamonas sp. Strain E6

(2009) Y. Fukuhara et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

Regulation of phenylacetic acid degradation genes of Burkholderia cenocepacia K56-2

(2009) Jason NR Hamlin et al.   BMC MICROBIOLOGY

Field-Based Stable Isotope Probing Reveals the Identities of Benzoic Acid-Metabolizing Microorganisms and Their In Situ Growth in Agricultural Soil

(2008) G. M. Pumphrey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolation and Characterization of Alicycliphilus denitrificans Strain BC, Which Grows on Benzene with Chlorate as the Electron Acceptor

(2008) S. A. B. Weelink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Genome of Polaromonas sp. Strain JS666: Insights into the Evolution of a Hydrocarbon- and Xenobiotic-Degrading Bacterium, and Features of Relevance to Biotechnology

(2008) T. E. Mattes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Examination and expansion of the substrate range of m-hydroxybenzoate hydroxylase

(2008) Hung-Kuang Chang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A new mycorrhizal helper bacterium, Ralstonia species, in the ectomycorrhizal symbiosis between Pinus thunbergii and Suillus granulatus

(2008) Ryota Kataoka et al.   BIOLOGY AND FERTILITY OF SOILS

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

(2008) Roy Gross et al.   BMC GENOMICS

Field-based and laboratory stable isotope probing surveys of the identities of both aerobic and anaerobic benzene-metabolizing microorganisms in freshwater sediment

(2008) J. S.-C. Liou et al.   ENVIRONMENTAL MICROBIOLOGY

Discovery of a bacterial gene cluster for catabolism of the plant hormone indole 3-acetic acid

(2008) Johan H.J. Leveau et al.   FEMS MICROBIOLOGY ECOLOGY

Genome sequence of the  -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

(2008) C. Amadou et al.   GENOME RESEARCH

A Functional Phenylacetic Acid Catabolic Pathway Is Required for Full Pathogenicity of Burkholderia cenocepacia in the Caenorhabditis elegans Host Model

(2008) R. J. Law et al.   JOURNAL OF BACTERIOLOGY

Structure of Bacterial Glutathione-S-Transferase Maleyl Pyruvate Isomerase and Implications for Mechanism of Isomerisation

(2008) May Marsh et al.   JOURNAL OF MOLECULAR BIOLOGY

Bacteria Subsisting on Antibiotics

(2008) G. Dantas et al.   SCIENCE

Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice

(2008) Derrick E. Fouts et al.   PLoS Genetics