A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems

Culture-Dependent and -Independent Identification of Polyphosphate-Accumulating Dechloromonas spp. Predominating in a Full-Scale Oxidation Ditch Wastewater Treatment Plant

(2016) Mia Terashima et al.   MICROBES AND ENVIRONMENTS

Candidatus Accumulibacter phosphatis clades enriched under cyclic anaerobic and microaerobic conditions simultaneously use different electron acceptors

(2016) Pamela Y. Camejo et al.   WATER RESEARCH

Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions

(2016) Yingyu Law et al.   Scientific Reports

“Candidatus Propionivibrio aalborgensis”: A Novel Glycogen Accumulating Organism Abundant in Full-Scale Enhanced Biological Phosphorus Removal Plants

(2016) Mads Albertsen et al.   Frontiers in Microbiology

Prevalence of ‘Candidatus Accumulibacter phosphatis’ type II under phosphate limiting conditions

(2016) L. Welles et al.   AMB Express

Dynamics of the Fouling Layer Microbial Community in a Membrane Bioreactor

(2016) Anja S. Ziegler et al.   PLoS One

Intracellular Accumulation of Glycine in Polyphosphate-Accumulating Organisms in Activated Sludge, a Novel Storage Mechanism under Dynamic Anaerobic-Aerobic Conditions

(2015) Hien Thi Thu Nguyen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis

(2015) Ben O Oyserman et al.   ISME Journal

The activated sludge ecosystem contains a core community of abundant organisms

(2015) Aaron M Saunders et al.   ISME Journal

Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities

(2015) Mads Albertsen et al.   PLoS One

Accumulibacter clades Type I and II performing kinetically different glycogen-accumulating organisms metabolisms for anaerobic substrate uptake

(2015) L. Welles et al.   WATER RESEARCH

MiDAS: the field guide to the microbes of activated sludge

(2015) Simon Jon McIlroy et al.   Database-The Journal of Biological Databases and Curation

Dominant and novel clades of Candidatus Accumulibacter phosphatis in 18 globally distributed full-scale wastewater treatment plants

(2015) Yanping Mao et al.   Scientific Reports

Identification of active denitrifiers in full-scale nutrient removal wastewater treatment systems

(2014) Simon Jon McIlroy et al.   ENVIRONMENTAL MICROBIOLOGY

Expanding our view of genomic diversity inCandidatus Accumulibacter clades

(2014) Connor T. Skennerton et al.   ENVIRONMENTAL MICROBIOLOGY

An Expanded Genomic Representation of the Phylum Cyanobacteria

(2014) Rochelle M. Soo et al.   Genome Biology and Evolution

Metabolic Characteristics of a Glycogen-Accumulating Organism in Defluviicoccus Cluster II Revealed by Comparative Genomics

(2014) Zhiping Wang et al.   MICROBIAL ECOLOGY

The potential role of ‘Candidatus Microthrix parvicella’ in phosphorus removal during sludge bulking in two full-scale enhanced biological phosphorus removal plants

(2014) Juan Wang et al.   WATER SCIENCE AND TECHNOLOGY

Re-appraisal of the phylogeny and fluorescencein situhybridization probes for the analysis of theCompetibacteraceaein wastewater treatment systems

(2014) Simon J. McIlroy et al.   Environmental Microbiology Reports

Prediction of intracellular storage polymers using quantitative image analysis in enhanced biological phosphorus removal systems

(2013) Daniela P. Mesquita et al.   ANALYTICA CHIMICA ACTA

Characterization of the Denitrification-Associated Phosphorus Uptake Properties of “Candidatus Accumulibacter phosphatis” Clades in Sludge Subjected to Enhanced Biological Phosphorus Removal

(2013) Jeong Myeong Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Low Acetate Concentrations Favor Polyphosphate-Accumulating Organisms over Glycogen-Accumulating Organisms in Enhanced Biological Phosphorus Removal from Wastewater

(2013) Yunjie Tu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metabolic model for the filamentous ‘Candidatus Microthrix parvicella’ based on genomic and metagenomic analyses

(2013) Simon Jon McIlroy et al.   ISME Journal

Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal

(2013) Jason J Flowers et al.   ISME Journal

‘Candidatus Competibacter’-lineage genomes retrieved from metagenomes reveal functional metabolic diversity

(2013) Simon J McIlroy et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Deciphering the Genome of Polyphosphate Accumulating Actinobacterium Microlunatus phosphovorus

(2012) A. Kawakoshi et al.   DNA RESEARCH

‘CandidatusHalomonas phosphatis’, a novel polyphosphate-accumulating organism in full-scale enhanced biological phosphorus removal plants

(2012) Hien Thi Thu Nguyen et al.   ENVIRONMENTAL MICROBIOLOGY

A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal

(2012) Rikke Kristiansen et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Population dynamics of bacteria involved in enhanced biological phosphorus removal in Danish wastewater treatment plants

(2012) Artur Tomasz Mielczarek et al.   WATER RESEARCH

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

New trends in fluorescence in situ hybridization for identification and functional analyses of microbes

(2011) Michael Wagner et al.   CURRENT OPINION IN BIOTECHNOLOGY

High diversity and abundance of putative polyphosphate-accumulating Tetrasphaera-related bacteria in activated sludge systems

(2011) Hien Thi Thu Nguyen et al.   FEMS MICROBIOLOGY ECOLOGY

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

(2011) Tong Zhang et al.   ISME Journal

Identification of a novel subgroup of uncultured gammaproteobacterial glycogen-accumulating organisms in enhanced biological phosphorus removal sludge

(2011) J. M. Kim et al.   MICROBIOLOGY-SGM

Microbiology of ‘Candidatus Accumulibacter’ in activated sludge

(2011) Shaomei He et al.   Microbial Biotechnology

Economic Feasibility Study for Phosphorus Recovery Processes

(2010) María Molinos-Senante et al.   AMBIO

Analysis of the Fine-Scale Population Structure of "Candidatus Accumulibacter phosphatis" in Enhanced Biological Phosphorus Removal Sludge, Using Fluorescence In Situ Hybridization and Flow Cytometric Sorting

(2010) J. M. Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Non-target sites with single nucleotide insertions or deletions are frequently found in 16S rRNA sequences and can lead to false positives in fluorescence in situ hybridization (FISH)

(2010) Simon J. McIlroy et al.   ENVIRONMENTAL MICROBIOLOGY

Application of Raman Microscopy for Simultaneous and Quantitative Evaluation of Multiple Intracellular Polymers Dynamics Functionally Relevant to Enhanced Biological Phosphorus Removal Processes

(2010) Nehreen Majed et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Filamentous members of cluster III Defluviicoccus have the in situ phenotype expected of a glycogen-accumulating organism in activated sludge

(2010) Simon J. McIlroy et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Modelling the population dynamics and metabolic diversity of organisms relevant in anaerobic/anoxic/aerobic enhanced biological phosphorus removal processes

(2010) A. Oehmen et al.   WATER RESEARCH

Monitoring associations between clade-level variation, overall community structure and ecosystem function in enhanced biological phosphorus removal (EBPR) systems using terminal-restriction fragment length polymorphism (T-RFLP)

(2010) F.R. Slater et al.   WATER RESEARCH

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

(2010) T. Chen et al.   Database-The Journal of Biological Databases and Curation

Description of Tessaracoccus profundi sp.nov., a deep-subsurface actinobacterium isolated from a Chesapeake impact crater drill core (940 m depth)

(2009) K. W. Finster et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Dynamics of Polyphosphate-Accumulating Bacteria in Wastewater Treatment Plant Microbial Communities Detected via DAPI (4',6'-Diamidino-2-Phenylindole) and Tetracycline Labeling

(2009) S. Gunther et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogeny andin situidentification of a novel gammaproteobacterium in activated sludge

(2009) Sarah Schroeder et al.   FEMS MICROBIOLOGY LETTERS

Anaerobic central metabolic pathways active during polyhydroxyalkanoate production in uncultured cluster 1Defluviicoccusenriched in activated sludge communities

(2009) Luke C. Burow et al.   FEMS MICROBIOLOGY LETTERS

Environment: The disappearing nutrient

(2009) Natasha Gilbert   NATURE

Candidatus Monilibacter spp., common bulking filaments in activated sludge, are members of Cluster III Defluviicoccus

(2009) Tadashi Nittami et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Elucidating further phylogenetic diversity among theDefluviicoccus-related glycogen-accumulating organisms in activated sludge

(2009) Simon McIlroy et al.   Environmental Microbiology Reports

Denitrification capabilities of two biological phosphorus removal sludges dominated by different ‘CandidatusAccumulibacter’ clades

(2009) Jason J. Flowers et al.   Environmental Microbiology Reports

Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal

(2008) S. Brook Peterson et al.   ENVIRONMENTAL MICROBIOLOGY

The microbiology of phosphorus removal in activated sludge processes-the current state of play

(2008) Robert J. Seviour et al.   JOURNAL OF MICROBIOLOGY

Interactions between calcium precipitation and the polyphosphate-accumulating bacteria metabolism

(2008) R. Barat et al.   WATER RESEARCH

Could polyphosphate-accumulating organisms (PAOs) be glycogen-accumulating organisms (GAOs)?

(2008) Yan Zhou et al.   WATER RESEARCH