Estimating coverage in metagenomic data sets and why it matters

Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets

(2013) Luis M. Rodriguez-R et al.   BIOINFORMATICS

Predicting the molecular complexity of sequencing libraries

(2013) Timothy Daley et al.   NATURE METHODS

Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens’ theorem

(2012) Michael C. Wendl et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial species may exist, metagenomics reveal

(2011) Alejandro Caro-Quintero et al.   ENVIRONMENTAL MICROBIOLOGY

Occupancy Modeling, Maximum Contig Size Probabilities and Designing Metagenomics Experiments

(2010) Stephen A. Stanhope   PLoS One

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Estimating DNA coverage and abundance in metagenomes using a gamma approximation

(2009) Sean D. Hooper et al.   BIOINFORMATICS