De Novo Transcriptomic Analysis and Development of EST–SSRs for Styrax japonicus

DArT, SNP, and SSR analyses of genetic diversity in Lolium perenne L. using bulk sampling

(2018) Siyang Liu et al.   BMC GENETICS

A new set of mulberry-specific SSR markers for application in cultivar identification and DUS testing

(2018) Marian Vincent Pinto et al.   JOURNAL OF GENETICS

De Novo Sequencing and Assembly Analysis of Transcriptome in Pinus bungeana Zucc. ex Endl.

(2018) Qifei Cai et al.   Forests

Construction of a genetic linkage map based on RAPD, AFLP, and SSR markers for tea plant (Camellia sinensis)

(2017) Yali Chang et al.   EUPHYTICA

TILLING, high-resolution melting (HRM), and next-generation sequencing (NGS) techniques in plant mutation breeding

(2017) Sima Taheri et al.   MOLECULAR BREEDING

De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae)

(2017) Xinle Duan et al.   PLoS One

De novo transcriptomic analysis and development of EST-SSRs for Sorbus pohuashanensis (Hance) Hedl.

(2017) Congcong Liu et al.   PLoS One

De novo assembly of transcriptome from Rhododendron latoucheae Franch. using Illumina sequencing and development of new EST-SSR markers for genetic diversity analysis in Rhododendron

(2017) Wen Xing et al.   Tree Genetics & Genomes

De Novo Assembly of Transcriptome and Development of Novel EST-SSR Markers in Rhododendron rex Lévl. through Illumina Sequencing

(2017) Yue Zhang et al.   Frontiers in Plant Science

RNA-Seq of Guar (Cyamopsis tetragonoloba, L. Taub.) Leaves: De novo Transcriptome Assembly, Functional Annotation and Development of Genomic Resources

(2017) Umesh K. Tanwar et al.   Frontiers in Plant Science

De novo and reference transcriptome assembly of transcripts expressed during flowering provide insight into seed setting in tetraploid red clover

(2017) Mallikarjuna Rao Kovi et al.   Scientific Reports

De novo transcriptome analysis of Fraxinus velutina using Illumina platform and development of EST-SSR markers

(2016) L.-P. Yan et al.   BIOLOGIA PLANTARUM

Microsatellite markers: what they mean and why they are so useful

(2016) Maria Lucia Carneiro Vieira et al.   GENETICS AND MOLECULAR BIOLOGY

Molecular markers: a potential resource for ginger genetic diversity studies

(2016) Nor Asiah Ismail et al.   MOLECULAR BIOLOGY REPORTS

De novo assembly of the transcriptome of Neottopteris nidus using Illumina paired-end sequencing and development of EST-SSR markers

(2016) Xinping Jia et al.   MOLECULAR BREEDING

Development and characterization of EST-SSR markers for the genus Rhododendron section Brachycalyx (Ericaceae)

(2016) Watanabe Yoichi et al.   PLANT SPECIES BIOLOGY

Genetic variation and identification of promising sour cherries inferred from microsatellite markers

(2016) R. Najafzadeh et al.   RUSSIAN JOURNAL OF GENETICS

De novo transcriptome assembly and development of SSR markers of oaks Quercus austrocochinchinensis and Q. kerrii (Fagaceae)

(2016) Miao An et al.   Tree Genetics & Genomes

Development and cross-species transferability of EST-SSR markers in Siberian wildrye (Elymus sibiricus L.) using Illumina sequencing

(2016) Qiang Zhou et al.   Scientific Reports

Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae)

(2016) Mohammad Vatanparast et al.   Scientific Reports

De novo transcriptome assembly, development of EST-SSR markers and population genetic analyses for the desert biomass willow, Salix psammophila

(2016) Huixia Jia et al.   Scientific Reports

Identification, development, and application of 12 polymorphic EST-SSR markers for an endemic Chinese walnut (Juglans cathayensis L.) using next-generation sequencing technology

(2015) Meng Dang et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Characterization of transcriptome and development of novel EST-SSR makers based on next-generation sequencing technology in Neolitsea sericea (Lauraceae) endemic to East Asian land-bridge islands

(2015) Lu-Yao Chen et al.   MOLECULAR BREEDING

De novo assembly and characterization of the leaf, bud, and fruit transcriptome from the vulnerable tree Juglans mandshurica for the development of 20 new microsatellite markers using Illumina sequencing

(2015) Zhuang Hu et al.   MOLECULAR GENETICS AND GENOMICS

Novel Chloroplast Microsatellite (cpSSR) Markers for Genetic Diversity Assessment of Cultivated and Wild Hevea Rubber

(2015) Chalermpol Phumichai et al.   PLANT MOLECULAR BIOLOGY REPORTER

Transcriptome Sequencing of Mung Bean (Vigna radiate L.) Genes and the Identification of EST-SSR Markers

(2015) Honglin Chen et al.   PLoS One

Characterisation and development of EST-SSR markers in tree peony using transcriptome sequences

(2014) Jing Wu et al.   MOLECULAR BREEDING

Exploiting EST databases for the development and characterization of EST-SSR markers in blueberry (Vaccinium) and their cross-species transferability in Vaccinium spp

(2014) You-chun Liu et al.   SCIENTIA HORTICULTURAE

De novo assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading

(2013) Caiqin Li et al.   BMC GENOMICS

Development of microsatellite markers by transcriptome sequencing in two species of Amorphophallus (Araceae)

(2013) Xingfei Zheng et al.   BMC GENOMICS

PICcalc: An Online Program to Calculate Polymorphic Information Content for Molecular Genetic Studies

(2012) Sándor Nagy et al.   BIOCHEMICAL GENETICS

Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq

(2012) Chao Feng et al.   BMC GENOMICS

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

(2012) Dejun Li et al.   BMC GENOMICS

De Novo Characterization of Leaf Transcriptome Using 454 Sequencing and Development of EST-SSR Markers in Tea (Camellia sinensis)

(2012) Hualing Wu et al.   PLANT MOLECULAR BIOLOGY REPORTER

Exploiting BAC-end sequences for the mining, characterization and utility of new short sequences repeat (SSR) markers in Citrus

(2011) Manosh Kumar Biswas et al.   MOLECULAR BIOLOGY REPORTS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Effect of warm and cold stratification on 1H-NMR profiles, endogenous gibberellins and abscisic acid in Styrax japonicus seeds

(2011) Taiga Horimoto et al.   Horticulture Environment and Biotechnology

Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)

(2010) Pablo F Cavagnaro et al.   BMC GENOMICS

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

Twenty-three microsatellite loci for Styrax confusus and Styrax japonicus (Styracaceae)

(2009) Xiao-Yan Wang et al.   Conservation Genetics Resources

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

(2008) Peter A. C. 't Hoen et al.   NUCLEIC ACIDS RESEARCH