Characterization of transcriptome and development of novel EST-SSR makers based on next-generation sequencing technology in Neolitsea sericea (Lauraceae) endemic to East Asian land-bridge islands

Transcriptome analysis of distinct Lindera glauca tissues revealed the differences in the unigenes related to terpenoid biosynthesis

(2015) Jun Niu et al.   GENE

Investigation of Flavonoid Glycosides fromNeolitsea Sericeavar.Auratavia the General Method and HPLC-SPE-NMR

(2015) Sio-Hong Lam et al.   JOURNAL OF THE CHINESE CHEMICAL SOCIETY

Development of gene-based simple sequence repeat markers for association analysis in Cocos nucifera

(2014) Wei Xia et al.   MOLECULAR BREEDING

Characterization and cross-species transferability of EST–SSR markers developed from the transcriptome of Dysosma versipellis (Berberidaceae) and their application to population genetic studies

(2014) Rui Guo et al.   MOLECULAR BREEDING

De Novo Sequencing, Assembly, and Analysis of the Root Transcriptome of Persea americana (Mill.) in Response to Phytophthora cinnamomi and Flooding

(2014) Bianca J. Reeksting et al.   PLoS One

De novo assembly and characterization of transcriptome using Illumina paired-end sequencing and identification of CesA gene in ramie (Boehmeria nivea L. Gaud)

(2013) Touming Liu et al.   BMC GENOMICS

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Development of eSSR-Markers in Setaria italica and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and Non-Millet Species

(2013) Kajal Kumari et al.   PLoS One

De Novo Assembly of the Peanut (Arachis hypogaea L.) Seed Transcriptome Revealed Candidate Unigenes for Oil Accumulation Pathways

(2013) Dongmei Yin et al.   PLoS One

Transcriptome Sequencing and Expression Analysis of Terpenoid Biosynthesis Genes in Litsea cubeba

(2013) Xiao-Jiao Han et al.   PLoS One

Global Transcriptome Sequencing Using the Illumina Platform and the Development of EST-SSR Markers in Autotetraploid Alfalfa

(2013) Zhipeng Liu et al.   PLoS One

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

(2012) Dejun Li et al.   BMC GENOMICS

Late Pleistocene lineage divergence among populations of Neolitsea sericea (Lauraceae) across a deep sea-barrier in the Ryukyu Islands

(2012) Sheng-Nan Zhai et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeography and genetic diversity of East Asian Neolitsea sericea (Lauraceae) based on variations in chloroplast DNA sequences

(2012) Jung-Hyun Lee et al.   JOURNAL OF PLANT RESEARCH

Spatial and temporal patterns of neutral and adaptive genetic variation in the endangered African wild dog (Lycaon pictus)

(2012) CLARE D. MARSDEN et al.   MOLECULAR ECOLOGY

Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences

(2011) Juan E. Zalapa et al.   AMERICAN JOURNAL OF BOTANY

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery

(2011) Sukhjiwan Kaur et al.   BMC GENOMICS

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

(2011) Wenliang Wei et al.   BMC GENOMICS

Exploiting EST databases for the development and characterization of EST-SSR markers in castor bean (Ricinus communis L.)

(2011) Lijun Qiu et al.   BMC PLANT BIOLOGY

Large-scale development of expressed sequence tag-derived simple sequence repeat markers and diversity analysis in Arachis spp.

(2011) Padmalatha Koilkonda et al.   MOLECULAR BREEDING

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Isolation of compound microsatellite markers for the endangered plant Neolitsea sericea (Lauraceae)

(2010) Sheng-Nan Zhai et al.   AMERICAN JOURNAL OF BOTANY

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)

(2010) Pablo F Cavagnaro et al.   BMC GENOMICS

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping

(2008) François L Luro et al.   BMC GENOMICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Adaptive responses of independent traits to the same environmental gradient in the intertidal snail Bembicium vittatum

(2008) M S Johnson et al.   HEREDITY

Bioinformatics challenges of new sequencing technology

(2008) Mihai Pop et al.   TRENDS IN GENETICS

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources