De novo assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading

Characterisation of the wheat (triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat

(2013) Youko Oono et al.   BMC GENOMICS

Transcriptome Analysis of Mature Fruit Abscission Control in Olive

(2013) Jose A. Gil-Amado et al.   PLANT AND CELL PHYSIOLOGY

De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.)

(2012) Jianan Zhang et al.   BMC GENOMICS

Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq

(2012) Chao Feng et al.   BMC GENOMICS

Carbohydrate Stress Affecting Fruitlet Abscission and Expression of Genes Related to Auxin Signal Transduction Pathway in Litchi

(2012) Jian-Fei Kuang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

High-throughput sequencing-based gene profiling on multi-staged fruit development of date palm (Phoenix dactylifera, L.)

(2012) Yuxin Yin et al.   PLANT MOLECULAR BIOLOGY

De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis

(2012) Tae Kyung Hyun et al.   PLANT MOLECULAR BIOLOGY

Hormone Crosstalk in Plant Disease and Defense: More Than Just JASMONATE-SALICYLATE Antagonism

(2011) Alexandre Robert-Seilaniantz et al.   Annual Review of Phytopathology

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis

(2011) Qi Tang et al.   BMC GENOMICS

Transcriptomics of shading-induced and NAA-induced abscission in apple (Malus domestica) reveals a shared pathway involving reduced photosynthesis, alterations in carbohydrate transport and signaling and hormone crosstalk

(2011) Hong Zhu et al.   BMC PLANT BIOLOGY

Treatment with oligonol, a low-molecular polyphenol derived from lychee fruit, attenuates diabetes-induced hepatic damage through regulation of oxidative stress and lipid metabolism

(2011) Jeong Sook Noh et al.   BRITISH JOURNAL OF NUTRITION

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

(2011) R. Garg et al.   DNA RESEARCH

De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients

(2011) Hua Wenping et al.   GENOMICS

Regulation of photosynthesis and transcription factor expression by leaf shading and re-illumination in Arabidopsis thaliana leaves

(2011) Steffi Parlitz et al.   JOURNAL OF PLANT PHYSIOLOGY

The impact of light intensity on shade-induced leaf senescence

(2011) BASTIAAN BROUWER et al.   PLANT CELL AND ENVIRONMENT

Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions

(2011) Hai-Ying Zhong et al.   PLANT CELL REPORTS

RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis

(2011) Zhihui Xia et al.   PLANT MOLECULAR BIOLOGY

Organelles Contribute Differentially to Reactive Oxygen Species-Related Events during Extended Darkness

(2011) S. Rosenwasser et al.   PLANT PHYSIOLOGY

Regulation of polyamine metabolism and biosynthetic gene expression during olive mature-fruit abscission

(2011) Jose A. Gil-Amado et al.   PLANTA

The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing

(2011) Da Cheng Hao et al.   PLoS One

Analysis of Transcriptome Differences between Resistant and Susceptible Strains of the Citrus Red Mite Panonychus citri (Acari: Tetranychidae)

(2011) Bin Liu et al.   PLoS One

Digital gene expression analysis of two life cycle stages of the human-infective parasite, Trypanosoma brucei gambiense reveals differentially expressed clusters of co-regulated genes

(2010) Nicola J Veitch et al.   BMC GENOMICS

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development

(2010) Xiao-Wei Wang et al.   BMC GENOMICS

Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish

(2010) Li-xin Xiang et al.   BMC GENOMICS

Optimization of de novo transcriptome assembly from next-generation sequencing data

(2010) Y. Surget-Groba et al.   GENOME RESEARCH

Expression profiling of cell cycle genes reveals key facilitators of cell production during carpel development, fruit set, and fruit growth in apple (Malus×domestica Borkh.)

(2010) Anish Malladi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

Microarray Analysis of the Abscission-Related Transcriptome in the Tomato Flower Abscission Zone in Response to Auxin Depletion

(2010) S. Meir et al.   PLANT PHYSIOLOGY

Signaling Pathways Mediating the Induction of Apple Fruitlet Abscission

(2010) A. Botton et al.   PLANT PHYSIOLOGY

Fruitlet abscission: A cDNA-AFLP approach to study genes differentially expressed during shedding of immature fruits reveals the involvement of a putative auxin hydrogen symporter in apple (Malus domestica L. Borkh)

(2009) Valeriano Dal Cin et al.   GENE

Next-generation tag sequencing for cancer gene expression profiling

(2009) A. S. Morrissy et al.   GENOME RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Expression of pigeonpea hybrid-proline-rich protein encoding gene (CcHyPRP) in yeast and Arabidopsis affords multiple abiotic stress tolerance

(2009) Bhyri Priyanka et al.   PLANT BIOTECHNOLOGY JOURNAL

Serial Analysis of Gene Expression (SAGE): 13 Years of Application in Research

(2008) Sergey Anisimov   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

Ethylene-induced differential gene expression during abscission of citrus leaves

(2008) Javier Agustí et al.   JOURNAL OF EXPERIMENTAL BOTANY

Isolation and characterization of genes associated with shade-induced apple abscission

(2008) Chunjiang Zhou et al.   MOLECULAR GENETICS AND GENOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

(2008) Peter A. C. 't Hoen et al.   NUCLEIC ACIDS RESEARCH