De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae)

De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms

(2016) Claude Rispe et al.   BMC GENOMICS

De novo assembly and characterization of the transcriptome of the pancreatic fluke Eurytrema pancreaticum (trematoda: Dicrocoeliidae) using Illumina paired-end sequencing

(2016) Guo-Hua Liu et al.   GENE

De novo assembly and characterization of foot transcriptome and microsatellite marker development for Paphia textile

(2016) Xiaoming Chen et al.   GENE

Life cycle and population genetics of bird cherry-oat aphids Rhopalosiphum padi in China: an important pest on wheat crops

(2016) Xinle Duan et al.   JOURNAL OF PEST SCIENCE

Investigating population differentiation in a major African agricultural pest: evidence from geometric morphometrics and connectivity suggests high invasion potential

(2016) M. Karsten et al.   MOLECULAR ECOLOGY

Development and cross-species transferability of EST-SSR markers in Siberian wildrye (Elymus sibiricus L.) using Illumina sequencing

(2016) Qiang Zhou et al.   Scientific Reports

De novoassembly, gene annotation, and simple sequence repeat marker development using Illumina paired-end transcriptome sequences in the pearl oysterPinctada maxima

(2014) Yuewen Deng et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

De Novo Characterisation of the Greenlip Abalone Transcriptome (Haliotis laevigata) with a Focus on the Heat Shock Protein 70 (HSP70) Family

(2014) Brett P. Shiel et al.   MARINE BIOTECHNOLOGY

Deep sequencing of the mantle transcriptome of the great scallop Pecten maximus

(2014) Sébastien Artigaud et al.   Marine Genomics

Gene Discovery through Transcriptome Sequencing for the Invasive Mussel Limnoperna fortunei

(2014) Marcela Uliano-Silva et al.   PLoS One

Development of microsatellite markers by transcriptome sequencing in two species of Amorphophallus (Araceae)

(2013) Xingfei Zheng et al.   BMC GENOMICS

De novocharacterization of theDialeurodes citritranscriptome: mining genes involved in stress resistance and simple sequence repeats (SSRs) discovery

(2013) E-H. Chen et al.   INSECT MOLECULAR BIOLOGY

Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)

(2013) Linlin Zhang et al.   MARINE BIOTECHNOLOGY

Characterization and high cross-species transferability of microsatellite markers from the floral transcriptome ofAspidistra saxicola(Asparagaceae)

(2013) Danni Huang et al.   Molecular Ecology Resources

Population Genetics of Ceratitis capitata in South Africa: Implications for Dispersal and Pest Management

(2013) Minette Karsten et al.   PLoS One

Transcriptomic Immune Response of Tenebrio molitor Pupae to Parasitization by Scleroderma guani

(2013) Jia-Ying Zhu et al.   PLoS One

Comparison of Gene Repertoires and Patterns of Evolutionary Rates in Eight Aphid Species That Differ by Reproductive Mode

(2012) M. Ollivier et al.   Genome Biology and Evolution

The transcriptome of Spodoptera exigua larvae exposed to different types of microbes

(2012) Laura Pascual et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

De novo characterization of the Timema cristinae transcriptome facilitates marker discovery and inference of genetic divergence

(2012) AARON A. COMEAULT et al.   Molecular Ecology Resources

Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species

(2012) Emese Meglécz et al.   PLoS One

Transcriptome Sequencing and De Novo Analysis for Ma Bamboo (Dendrocalamus latiflorus Munro) Using the Illumina Platform

(2012) Mingying Liu et al.   PLoS One

The effects of reproductive specialization on energy costs and fitness genetic variances in cyclical and obligate parthenogenetic aphids

(2012) Mauricio J. Carter et al.   Ecology and Evolution

Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development

(2012) B. Wang et al.   Open Biology

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX

(2011) Rui Hou et al.   PLoS One

Genome-Wide Distribution and Organization of Microsatellites in Plants: An Insight into Marker Development in Brachypodium

(2011) Humira Sonah et al.   PLoS One

Transcriptome Sequencing, and Rapid Development and Application of SNP Markers for the Legume Pod Borer Maruca vitrata (Lepidoptera: Crambidae)

(2011) Venu M. Margam et al.   PLoS One

Transcriptome sequencing of an ecologically important graminivorous sawfly: a resource for marker development

(2011) N. Cook et al.   Conservation Genetics Resources

Patterns of Genetic Variation and Host Adaptation in an Invasive Population of Rhopalosiphum padi (Hemiptera: Aphididae)

(2010) Isabel Valenzuela et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita

(2010) Philippe Castagnone-Sereno et al.   BMC GENOMICS

A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study

(2010) Jérôme Durand et al.   BMC GENOMICS

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development

(2010) Xiao-Wei Wang et al.   BMC GENOMICS

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

Combining Next-Generation Sequencing Strategies for Rapid Molecular Resource Development from an Invasive Aphid Species, Aphis glycines

(2010) Xiaodong Bai et al.   PLoS One

Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella

(2009) Dietmar Schwarz et al.   BMC GENOMICS

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species

(2009) Xuanqiang Liang et al.   BMC PLANT BIOLOGY

Multiple mechanisms responsible for differential susceptibilities of Sitobion avenae (Fabricius) and Rhopalosiphum padi (Linnaeus) to pirimicarb

(2009) Y. Lu et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference

(2008) Tae-Sung Kim et al.   BMC GENOMICS

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

High Degree of Transferability of 86 Newly Developed Zebra Finch EST-Linked Microsatellite Markers in 8 Bird Species

(2008) Nikoletta Karaiskou et al.   JOURNAL OF HEREDITY

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources