Plasmodium vivax transcriptomes reveal stage-specific chloroquine response and differential regulation of male and female gametocytes

Genomic Analyses Reveal the Common Occurrence and Complexity of Plasmodium vivax Relapses in Cambodia

(2018) Jean Popovici et al.   mBio

Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites

(2018) Adam J Reid et al.   eLife

Recrudescence, Reinfection, or Relapse? A More Rigorous Framework to Assess Chloroquine Efficacy for Plasmodium vivax Malaria

(2018) Jean Popovici et al.   JOURNAL OF INFECTIOUS DISEASES

Capturing in vivo RNA transcriptional dynamics from the malaria parasite Plasmodium falciparum

(2017) Heather J. Painter et al.   GENOME RESEARCH

Nascent RNA sequencing reveals mechanisms of gene regulation in the human malaria parasite Plasmodium falciparum

(2017) Xueqing Maggie Lu et al.   NUCLEIC ACIDS RESEARCH

Characterization of P. vivax blood stage transcriptomes from field isolates reveals similarities among infections and complex gene isoforms

(2017) Adam Kim et al.   Scientific Reports

Global Epidemiology of Plasmodium vivax

(2016) Rosalind E. Howes et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Selective sweep suggests transcriptional regulation may underliePlasmodium vivaxresilience to malaria control measures in Cambodia

(2016) Christian M. Parobek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complexity of Infection and Genetic Diversity in Cambodian Plasmodium vivax

(2016) Lindsey R. Friedrich et al.   PLoS Neglected Tropical Diseases

Integrated analysis of the Plasmodium species transcriptome

(2016) Regina Hoo et al.   EBioMedicine

New insights into the Plasmodium vivax transcriptome using RNA-Seq

(2016) Lei Zhu et al.   Scientific Reports

Genome-wide transcriptome profiling reveals functional networks involving the Plasmodium falciparum drug resistance transporters PfCRT and PfMDR1

(2015) Sophie H. Adjalley et al.   BMC GENOMICS

Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA

(2015) Kate M Broadbent et al.   BMC GENOMICS

Plasmodium knowlesi gene expression differs in ex vivo compared to in vitro blood-stage cultures

(2015) Stacey A Lapp et al.   MALARIA JOURNAL

Robust enumeration of cell subsets from tissue expression profiles

(2015) Aaron M Newman et al.   NATURE METHODS

Plasmodium vivax gametocyte proteins, Pvs48/45 and Pvs47, induce transmission-reducing antibodies by DNA immunization

(2015) Mayumi Tachibana et al.   VACCINE

A comprehensive evaluation of rodent malaria parasite genomes and gene expression

(2014) Thomas D Otto et al.   BMC BIOLOGY

Single-cell genomics for dissection of complex malaria infections

(2014) S. Nair et al.   GENOME RESEARCH

Population transcriptomics of human malaria parasites reveals the mechanism of artemisinin resistance

(2014) S. Mok et al.   SCIENCE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Whole Genome Sequencing of Field Isolates Provides Robust Characterization of Genetic Diversity in Plasmodium vivax

(2012) Ernest R. Chan et al.   PLoS Neglected Tropical Diseases

Individual Plasmodium vivax msp1 Variants within Polyclonal P. vivax Infections Display Different Propensities for Relapse

(2011) J. T. Lin et al.   JOURNAL OF CLINICAL MICROBIOLOGY

From In Vivo to In Vitro: Dynamic Analysis of Plasmodium falciparum var Gene Expression Patterns of Patient Isolates during Adaptation to Culture

(2011) Qingfeng Zhang et al.   PLoS One

Malaria gametocytogenesis

(2010) David A. Baker   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

New insights into the blood-stage transcriptome ofPlasmodium falciparumusing RNA-Seq

(2010) Thomas D. Otto et al.   MOLECULAR MICROBIOLOGY

A Systems-Based Analysis of Plasmodium vivax Lifecycle Transcription from Human to Mosquito

(2010) Scott J. Westenberger et al.   PLoS Neglected Tropical Diseases

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Patterns of Gene-Specific and Total Transcriptional Activity during thePlasmodium falciparumIntraerythrocytic Developmental Cycle

(2009) Jennifer S. Sims et al.   EUKARYOTIC CELL

Key gaps in the knowledge of Plasmodium vivax, a neglected human malaria parasite

(2009) Ivo Mueller et al.   LANCET INFECTIOUS DISEASES

Statistical estimation of cell-cycle progression and lineage commitment in Plasmodium falciparum reveals a homogeneous pattern of transcription in ex vivo culture

(2009) J. E. Lemieux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Transcriptional and Genomic Analysis of Plasmodium falciparum Field Isolates

(2009) Margaret J. Mackinnon et al.   PLoS Pathogens

Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate

(2008) Onguma Natalang et al.   BMC GENOMICS

Plasmodium vivax trophozoites insensitive to chloroquine

(2008) Wesley W Sharrock et al.   MALARIA JOURNAL

Sex ratio adjustment and kin discrimination in malaria parasites

(2008) Sarah E. Reece et al.   NATURE

The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites

(2008) Z. Bozdech et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Genetically Hard-Wired Metabolic Transcriptome in Plasmodium falciparum Fails to Mount Protective Responses to Lethal Antifolates

(2008) Karthikeyan Ganesan et al.   PLoS Pathogens

Extensive microsatellite diversity in the human malaria parasite Plasmodium vivax

(2007) Nadira D. Karunaweera et al.   GENE