A comprehensive evaluation of rodent malaria parasite genomes and gene expression
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A comprehensive evaluation of rodent malaria parasite genomes and gene expression
Authors
Keywords
Plasmodium chabaudi, Plasmodium berghei, Plasmodium yoelii, Genomes, RNA-seq, Genotypic diversity, Multigene families, pirs, Phylogeny
Journal
BMC BIOLOGY
Volume 12, Issue 1, Pages -
Publisher
Springer Nature
Online
2014-10-29
DOI
10.1186/s12915-014-0086-0
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Two Plasmodium 6-Cys family-related proteins have distinct and critical roles in liver-stage development
- (2014) Takeshi Annoura et al. FASEB JOURNAL
- Post-transcriptional silencing ofUIS4inPlasmodium bergheisporozoites is important for host switch
- (2014) Olivier Silvie et al. MOLECULAR MICROBIOLOGY
- A new computational approach redefines the subtelomeric vir superfamily of Plasmodium vivax
- (2013) Francisco Javier Lopez et al. BMC GENOMICS
- Variant surface antigens of malaria parasites: functional and evolutionary insights from comparative gene family classification and analysis
- (2013) Christian Frech et al. BMC GENOMICS
- Quantifying variation in the potential for antibody-mediated apparent competition among nine genotypes of the rodent malaria parasite Plasmodium chabaudi
- (2013) Karen J. Fairlie-Clarke et al. INFECTION GENETICS AND EVOLUTION
- Identification of aPlasmodium falciparumPhospholipid Transfer Protein
- (2013) Christiaan van Ooij et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Mosquito transmission, growth phenotypes and the virulence of malaria parasites
- (2013) Laura C Pollitt et al. MALARIA JOURNAL
- Vector transmission regulates immune control of Plasmodium virulence
- (2013) Philip J. Spence et al. NATURE
- Role of Plasmepsin V in Export of Diverse Protein Families from thePlasmodium falciparumExportome
- (2013) Justin A. Boddey et al. TRAFFIC
- REAPR: a universal tool for genome assembly evaluation
- (2013) Martin Hunt et al. GENOME BIOLOGY
- Molecular evolution and phylogenetics of rodent malaria parasites
- (2012) Ricardo S Ramiro et al. BMC EVOLUTIONARY BIOLOGY
- Characterization and gene expression analysis of the cir multi-gene family of plasmodium chabaudi chabaudi (AS)
- (2012) Jennifer Lawton et al. BMC GENOMICS
- A Plasmodium Calcium-Dependent Protein Kinase Controls Zygote Development and Transmission by Translationally Activating Repressed mRNAs
- (2012) Sarah Sebastian et al. Cell Host & Microbe
- Proteomic and Genetic Analyses Demonstrate thatPlasmodium bergheiBlood Stages Export a Large and Diverse Repertoire of Proteins
- (2012) Erica M. Pasini et al. MOLECULAR & CELLULAR PROTEOMICS
- Differential analysis of gene regulation at transcript resolution with RNA-seq
- (2012) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade
- (2012) Shin-Ichiro Tachibana et al. NATURE GENETICS
- The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum
- (2012) Daniel E Neafsey et al. NATURE GENETICS
- A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
- (2012) Martin T Swain et al. Nature Protocols
- The Role of Animal Models for Research on Severe Malaria
- (2012) Alister G. Craig et al. PLoS Pathogens
- Functional analysis of Plasmodium vivax VIR proteins reveals different subcellular localizations and cytoadherence to the ICAM-1 endothelial receptor
- (2011) M. Bernabeu et al. CELLULAR MICROBIOLOGY
- A systematic analysis of the early transcribed membrane protein family throughout the life cycle of Plasmodium yoelii
- (2011) Drew C. MacKellar et al. CELLULAR MICROBIOLOGY
- The mammalian START domain protein family in lipid transport in health and disease
- (2011) Barbara J Clark JOURNAL OF ENDOCRINOLOGY
- Characterization and tissue-specific expression patterns of the Plasmodium chabaudi cir multigene family
- (2011) Petra Ebbinghaus et al. MALARIA JOURNAL
- Linear amplification for deep sequencing
- (2011) Wieteke A M Hoeijmakers et al. Nature Protocols
- RATT: Rapid Annotation Transfer Tool
- (2011) Thomas D. Otto et al. NUCLEIC ACIDS RESEARCH
- Linkage maps from multiple genetic crosses and loci linked to growth-related virulent phenotype in Plasmodium yoelii
- (2011) J. Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A toolbox to study liver stage malaria
- (2011) Miguel Prudêncio et al. TRENDS IN PARASITOLOGY
- Targeted Disruption of py235ebp-1: Invasion of Erythrocytes by Plasmodium yoelii Using an Alternative Py235 Erythrocyte Binding Protein
- (2011) Solabomi A. Ogun et al. PLoS Pathogens
- Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology
- (2010) Thomas D. Otto et al. BIOINFORMATICS
- Small variant surface antigens andPlasmodiumevasion of immunity
- (2010) Noelle Yvonne Jemmely et al. Future Microbiology
- A single parasite gene determines strain-specific protective immunity against malaria: The role of the merozoite surface protein I
- (2010) Sandra Cheesman et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- The pir multigene family of Plasmodium: Antigenic variation and beyond
- (2010) Deirdre Cunningham et al. MOLECULAR AND BIOCHEMICAL PARASITOLOGY
- Malaria gametocytogenesis
- (2010) David A. Baker MOLECULAR AND BIOCHEMICAL PARASITOLOGY
- Strain-specific immunity induced by immunization with pre-erythrocytic stages of Plasmodium chabaudi
- (2010) R. L. CULLETON et al. PARASITE IMMUNOLOGY
- That Was Then But This Is Now: Malaria Research in the Time of an Eradication Agenda
- (2010) S. H. I. Kappe et al. SCIENCE
- A genotype and phenotype database of genetically modified malaria-parasites
- (2010) Chris J. Janse et al. TRENDS IN PARASITOLOGY
- Universal Features of Post-Transcriptional Gene Regulation Are Critical for Plasmodium Zygote Development
- (2010) Gunnar R. Mair et al. PLoS Pathogens
- Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
- (2010) Isheng J Tsai et al. GENOME BIOLOGY
- ABACAS: algorithm-based automatic contiguation of assembled sequences
- (2009) S. Assefa et al. BIOINFORMATICS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- The varieties of gene amplification, diversification and hypervariability in the human malaria parasite, Plasmodium falciparum
- (2009) Thomas J. Templeton MOLECULAR AND BIOCHEMICAL PARASITOLOGY
- Gene encoding erythrocyte binding ligand linked to blood stage multiplication rate phenotype in Plasmodium yoelii yoelii
- (2009) S. Pattaradilokrat et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single amino acid substitution in Plasmodium yoelii erythrocyte ligand determines its localization and controls parasite virulence
- (2009) H. Otsuki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Protein export in malaria parasites: do multiple export motifs add up to multiple export pathways?
- (2009) Tobias Spielmann et al. TRENDS IN PARASITOLOGY
- Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
- (2008) Tim Carver et al. BIOINFORMATICS
- Experimental manipulation of immune-mediated disease and its fitness costs for rodent malaria parasites
- (2008) Gráinne H Long et al. BMC EVOLUTIONARY BIOLOGY
- Erythrocyte Binding Protein PfRH5 Polymorphisms Determine Species-Specific Pathways of Plasmodium falciparum Invasion
- (2008) Karen Hayton et al. Cell Host & Microbe
- Interactions of the malaria parasite and its mammalian host
- (2008) Olivier Silvie et al. CURRENT OPINION IN MICROBIOLOGY
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Strain-specific immunity may drive adaptive polymorphism in the merozoite surface protein 1 of the rodent malaria parasite Plasmodium chabaudi
- (2008) Sandra Cheesman et al. INFECTION GENETICS AND EVOLUTION
- A study on pathogenicity and mosquito transmission success in the rodent malaria parasite Plasmodium chabaudi adami
- (2008) Naomi Gadsby et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- The genome of the simian and human malaria parasite Plasmodium knowlesi
- (2008) A. Pain et al. NATURE
- Immunity to malaria: more questions than answers
- (2008) Jean Langhorne et al. NATURE IMMUNOLOGY
- Evidence-Based Annotation of the Malaria Parasite's Genome Using Comparative Expression Profiling
- (2008) Yingyao Zhou et al. PLoS One
- A combined transcriptome and proteome survey of malaria parasite liver stages
- (2008) A. S. Tarun et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
- Comparative evolutionary genomics of human malaria parasites
- (2008) Jane M. Carlton et al. TRENDS IN PARASITOLOGY
- Plasmodium vivax and the importance of the subtelomeric multigene vir superfamily
- (2008) Carmen Fernandez-Becerra et al. TRENDS IN PARASITOLOGY
- Congenicity and genetic polymorphism in cloned lines derived from a single isolate of a rodent malaria parasite
- (2007) Sittiporn Pattaradilokrat et al. MOLECULAR AND BIOCHEMICAL PARASITOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More