An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus

RiceAntherNet: a gene co-expression network for identifying anther and pollen development genes

(2017) Hong Lin et al.   PLANT JOURNAL

Selection for a Zinc-Finger Protein Contributes to Seed Oil Increase during Soybean Domestication

(2017) Qing-Tian Li et al.   PLANT PHYSIOLOGY

High-resolution mapping of QTL for fatty acid composition in soybean using specific-locus amplified fragment sequencing

(2017) Bin Li et al.   THEORETICAL AND APPLIED GENETICS

Identification of Major Quantitative Trait Loci for Seed Oil Content in Soybeans by Combining Linkage and Genome-Wide Association Mapping

(2017) Yongce Cao et al.   Frontiers in Plant Science

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

The transcriptomic signature of developing soybean seeds reveals the genetic basis of seed trait adaptation during domestication

(2016) Xiang Lu et al.   PLANT JOURNAL

Identification of stable QTLs for seed oil content by combined linkage and association mapping in Brassica napus

(2016) Fengming Sun et al.   PLANT SCIENCE

An Integrated Bioinformatics Analysis Reveals Divergent Evolutionary Pattern of Oil Biosynthesis in High- and Low-Oil Plants

(2016) Li Zhang et al.   PLoS One

Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

(2016) Xiaoping Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The plant lipidome in human and environmental health

(2016) P. J. Horn et al.   SCIENCE

Metabolic engineering of cottonseed oil biosynthesis pathway via RNA interference

(2016) Zhongping Xu et al.   Scientific Reports

Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes

(2015) Hai-Ming Xu et al.   BMC GENOMICS

Enhanced seed oil content by overexpressing genes related to triacylglyceride synthesis

(2015) Fang Liu et al.   GENE

Comparative Biochemical and Proteomic Analyses of Soybean Seed Cultivars Differing in Protein and Oil Content

(2015) Chul Woo Min et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Identification of regulatory network hubs that control lipid metabolism inChlamydomonas reinhardtii

(2015) Mahmoud Gargouri et al.   JOURNAL OF EXPERIMENTAL BOTANY

Redox rhythm reinforces the circadian clock to gate immune response

(2015) Mian Zhou et al.   NATURE

Down-regulation of crambe fatty acid desaturase and elongase in Arabidopsis and crambe resulted in significantly increased oleic acid content in seed oil

(2015) Xueyuan Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Deletion of a C-terminal intrinsically disordered region of WRINKLED1 affects its stability and enhances oil accumulation in Arabidopsis

(2015) Wei Ma et al.   PLANT JOURNAL

Integrated transcriptome sequencing and dynamic analysis reveal carbon source partitioning between terpenoid and oil accumulation in developing Lindera glauca fruits

(2015) Jun Niu et al.   Scientific Reports

Mass spectrometry characterisation of fatty acids from metabolically engineered soybean seeds

(2014) André M. Murad et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways

(2014) Juan Yu et al.   BMC GENOMICS

A genome-wide association study of seed protein and oil content in soybean

(2014) Eun-Young Hwang et al.   BMC GENOMICS

Soybean GmMYB73 promotes lipid accumulation in transgenic plants

(2014) Yun-Feng Liu et al.   BMC PLANT BIOLOGY

miRDB: an online resource for microRNA target prediction and functional annotations

(2014) Nathan Wong et al.   NUCLEIC ACIDS RESEARCH

InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic

(2014) Erik L.L. Sonnhammer et al.   NUCLEIC ACIDS RESEARCH

An annotated database of Arabidopsis mutants of acyl lipid metabolism

(2014) Kathleen McGlew et al.   PLANT CELL REPORTS

Specialization of Oleosins in Oil Body Dynamics during Seed Development in Arabidopsis Seeds

(2014) M. Miquel et al.   PLANT PHYSIOLOGY

Multigene Engineering of Triacylglycerol Metabolism Boosts Seed Oil Content in Arabidopsis

(2014) H. van Erp et al.   PLANT PHYSIOLOGY

Gene Expression in Plant Lipid Metabolism in Arabidopsis Seedlings

(2014) An-Shan Hsiao et al.   PLoS One

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

Quantitative trait loci that control the oil content variation of rapeseed (Brassica napus L.)

(2014) Congcong Jiang et al.   THEORETICAL AND APPLIED GENETICS

Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis

(2014) Linhai Wang et al.   GENOME BIOLOGY

Soybean GmbZIP123 gene enhances lipid content in the seeds of transgenic Arabidopsis plants

(2013) Q.-X. Song et al.   JOURNAL OF EXPERIMENTAL BOTANY

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Over-expression of JcDGAT1 from Jatropha curcas increases seed oil levels and alters oil quality in transgenic Arabidopsis thaliana

(2013) Aparna Misra et al.   PHYTOCHEMISTRY

Genome-Wide Analysis of Branched-Chain Amino Acid Levels in Arabidopsis Seeds

(2013) R. Angelovici et al.   PLANT CELL

Patatin-Related Phospholipase pPLAIII  Increases Seed Oil Content with Long-Chain Fatty Acids in Arabidopsis

(2013) M. Li et al.   PLANT PHYSIOLOGY

Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity

(2013) Sarah I. Jones et al.   PLoS One

Seed Structure Characteristics to Form Ultrahigh Oil Content in Rapeseed

(2013) Zhi-Yong Hu et al.   PLoS One

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon

(2012) Gudrun Mönke et al.   NUCLEIC ACIDS RESEARCH

Specific Downregulation of the Bacterial-Type PEPC Gene by Artificial MicroRNA Improves Salt Tolerance in Arabidopsis

(2012) Fulin Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Design of New Genome- and Gene-Sourced Primers and Identification of QTL for Seed Oil Content in a Specially High-Oil Brassica napus Cultivar

(2012) Meiyu Sun et al.   PLoS One

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Genetic variation of storage compounds and seed weight in rapeseed (Brassica napus L.) germplasms

(2011) Yoko Kennedy et al.   BREEDING SCIENCE

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Comparative deep transcriptional profiling of four developing oilseeds

(2011) Manuel A. Troncoso-Ponce et al.   PLANT JOURNAL

Enhanced Seed Oil Production in Canola by Conditional Expression of Brassica napus LEAFY COTYLEDON1 and LEC1-LIKE in Developing Seeds

(2011) H. Tan et al.   PLANT PHYSIOLOGY

Oil-Body-Membrane Proteins and Their Physiological Functions in Plants

(2010) Takashi L. Shimada et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

(2010) A. Graf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Increasing the flow of carbon into seed oil

(2009) Randall J. Weselake et al.   BIOTECHNOLOGY ADVANCES

Bacterial-type Phosphoenolpyruvate Carboxylase (PEPC) Functions as a Catalytic and Regulatory Subunit of the Novel Class-2 PEPC Complex of Vascular Plants

(2009) Brendan O'Leary et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Expression of Rapeseed Microsomal Lysophosphatidic Acid Acyltransferase Isozymes Enhances Seed Oil Content in Arabidopsis

(2009) S. Maisonneuve et al.   PLANT PHYSIOLOGY

Metabolic control analysis is helpful for informed genetic manipulation of oilseed rape (Brassica napus) to increase seed oil content

(2008) Randall J. Weselake et al.   JOURNAL OF EXPERIMENTAL BOTANY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

A phenylalanine in DGAT is a key determinant of oil content and composition in maize

(2008) Peizhong Zheng et al.   NATURE GENETICS

Plant triacylglycerols as feedstocks for the production of biofuels

(2008) Timothy P. Durrett et al.   PLANT JOURNAL

Coimmunopurification of Phosphorylated Bacterial- and Plant-Type Phosphoenolpyruvate Carboxylases with the Plastidial Pyruvate Dehydrogenase Complex from Developing Castor Oil Seeds

(2008) R. G. Uhrig et al.   PLANT PHYSIOLOGY

LEAFY COTYLEDON1 Is a Key Regulator of Fatty Acid Biosynthesis in Arabidopsis

(2008) J. Mu et al.   PLANT PHYSIOLOGY