SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways

A genome-wide association study of seed protein and oil content in soybean

(2014) Eun-Young Hwang et al.   BMC GENOMICS

Soybean oil biosynthesis: role of diacylglycerol acyltransferases

(2013) Runzhi Li et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Soybean GmbZIP123 gene enhances lipid content in the seeds of transgenic Arabidopsis plants

(2013) Q.-X. Song et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic control of soybean seed oil: II. QTL and genes that increase oil concentration without decreasing protein or with increased seed yield

(2013) Mehrzad Eskandari et al.   THEORETICAL AND APPLIED GENETICS

Genome-Wide Identification of Regulatory DNA Elements and Protein-Binding Footprints Using Signatures of Open Chromatin in Arabidopsis

(2012) W. Zhang et al.   PLANT CELL

Tissue-Specific Whole Transcriptome Sequencing in Castor, Directed at Understanding Triacylglycerol Lipid Biosynthetic Pathways

(2012) Adrian P. Brown et al.   PLoS One

ATTED-II Updates: Condition-Specific Gene Coexpression to Extend Coexpression Analyses and Applications to a Broad Range of Flowering Plants

(2011) T. Obayashi et al.   PLANT AND CELL PHYSIOLOGY

PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species

(2011) M. Mutwil et al.   PLANT CELL

Silencing of Soybean Seed Storage Proteins Results in a Rebalanced Protein Composition Preserving Seed Protein Content without Major Collateral Changes in the Metabolome and Transcriptome

(2011) M. A. Schmidt et al.   PLANT PHYSIOLOGY

Cytoscape Web: an interactive web-based network browser

(2010) Christian T. Lopes et al.   BIOINFORMATICS

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

(2010) Jianchang Du et al.   BMC GENOMICS

Mutant alleles of FAD2-1A and FAD2-1B combine to produce soybeans with the high oleic acid seed oil trait

(2010) Anh-Tung Pham et al.   BMC PLANT BIOLOGY

SoyDB: a knowledge database of soybean transcription factors

(2010) Zheng Wang et al.   BMC PLANT BIOLOGY

DGAT1, DGAT2 and PDAT Expression in Seeds and Other Tissues of Epoxy and Hydroxy Fatty Acid Accumulating Plants

(2010) Runzhi Li et al.   LIPIDS

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

VernoniaDGATs increase accumulation of epoxy fatty acids in oil

(2010) Runzhi Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network

(2009) Osnat Atias et al.   BMC Systems Biology

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Rank of Correlation Coefficient as a Comparable Measure for Biological Significance of Gene Coexpression

(2009) T. Obayashi et al.   DNA RESEARCH

Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families

(2009) Guru Jagadeeswaran et al.   NEW PHYTOLOGIST

Endogenous, Tissue-Specific Short Interfering RNAs Silence the Chalcone Synthase Gene Family in Glycine max Seed Coats

(2009) J. H. Tuteja et al.   PLANT CELL

Soybean Oil: Genetic Approaches for Modification of Functionality and Total Content

(2009) T. E. Clemente et al.   PLANT PHYSIOLOGY

Analysis of Acyl Fluxes through Multiple Pathways of Triacylglycerol Synthesis in Developing Soybean Embryos

(2009) P. D. Bates et al.   PLANT PHYSIOLOGY

Nanoridges that characterize the surface morphology of flowers require the synthesis of cutin polyester

(2009) Y. Li-Beisson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules

(2008) Yanwei Wang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

SoyXpress: A database for exploring the soybean transcriptome

(2008) Kei Cheng et al.   BMC GENOMICS

Novel and nodulation-regulated microRNAs in soybean roots

(2008) Senthil Subramanian et al.   BMC GENOMICS

Functional symmetry of the B3 network controlling seed development

(2008) Masaharu Suzuki et al.   CURRENT OPINION IN PLANT BIOLOGY

Sequencing and Analysis of Approximately 40 000 Soybean cDNA Clones from a Full-Length-Enriched cDNA Library

(2008) T. Umezawa et al.   DNA RESEARCH

A phenylalanine in DGAT is a key determinant of oil content and composition in maize

(2008) Peizhong Zheng et al.   NATURE GENETICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis

(2008) Monica Santos-Mendoza et al.   PLANT JOURNAL

Expression of Umbelopsis ramanniana DGAT2A in Seed Increases Oil in Soybean

(2008) K. Lardizabal et al.   PLANT PHYSIOLOGY

Identification of soybean microRNAs and their targets

(2008) Baohong Zhang et al.   PLANTA

Reconstituting plant miRNA biogenesis

(2008) J.-K. Zhu   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA