The transcriptomic signature of developing soybean seeds reveals the genetic basis of seed trait adaptation during domestication

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

Soybean GmMYB73 promotes lipid accumulation in transgenic plants

(2014) Yun-Feng Liu et al.   BMC PLANT BIOLOGY

De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits

(2014) Ying-hui Li et al.   NATURE BIOTECHNOLOGY

Dt2Is a Gain-of-Function MADS-Domain Factor Gene That Specifies Semideterminacy in Soybean

(2014) Jieqing Ping et al.   PLANT CELL

Salinity tolerance in soybean is modulated by natural variation inGmSALT3

(2014) Rongxia Guan et al.   PLANT JOURNAL

New approaches to facilitate rapid domestication of a wild plant to an oilseed crop: Example pennycress (Thlaspi arvense L.)

(2014) John C. Sedbrook et al.   PLANT SCIENCE

Pod shattering resistance associated with domestication is mediated by a NAC gene in soybean

(2014) Yang Dong et al.   Nature Communications

Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing

(2013) Ying-hui Li et al.   BMC GENOMICS

Population Structure and Domestication Revealed by High-Depth Resequencing of Korean Cultivated and Wild Soybean Genomes

(2013) W.-H. Chung et al.   DNA RESEARCH

Soybean oil biosynthesis: role of diacylglycerol acyltransferases

(2013) Runzhi Li et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Soybean GmbZIP123 gene enhances lipid content in the seeds of transgenic Arabidopsis plants

(2013) Q.-X. Song et al.   JOURNAL OF EXPERIMENTAL BOTANY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies

(2013) Zhenjun Hu et al.   NUCLEIC ACIDS RESEARCH

P-MITE: a database for plant miniature inverted-repeat transposable elements

(2013) Jiongjiong Chen et al.   NUCLEIC ACIDS RESEARCH

Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity

(2013) Sarah I. Jones et al.   PLoS One

Tracing soybean domestication history: From nucleotide to genome

(2012) Moon Young Kim et al.   BREEDING SCIENCE

Highly sensitive and quantitative profiling of acidic phytohormones using derivatization approach coupled with nano-LC–ESI-Q-TOF-MS analysis

(2012) Ming-Luan Chen et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Recent Developments of Genomic Research in Soybean

(2012) Ching Chan et al.   Journal of Genetics and Genomics

Arabidopsis Transcription Factor Genes NF-YA1, 5, 6, and 9 Play Redundant Roles in Male Gametogenesis, Embryogenesis, and Seed Development

(2012) Jinye Mu et al.   Molecular Plant

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Analysis of the Developmental Roles of the Arabidopsis Gibberellin 20-Oxidases Demonstrates That GA20ox1, -2, and -3 Are the Dominant Paralogs

(2012) A. R. G. Plackett et al.   PLANT CELL

Validation of reference genes for real-time quantitative PCR normalization in soybean developmental and germinating seeds

(2012) Qing Li et al.   PLANT CELL REPORTS

Interactions and CCAAT-Binding of Arabidopsis thaliana NF-Y Subunits

(2012) Valentina Calvenzani et al.   PLoS One

Soybean oil content QTL mapping and integrating with meta-analysis method for mining genes

(2011) Zhao-ming Qi et al.   EUPHYTICA

Archaeological Soybean (Glycine max) in East Asia: Does Size Matter?

(2011) Gyoung-Ah Lee et al.   PLoS One

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

(2010) Jianchang Du et al.   BMC GENOMICS

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Artificial selection for determinate growth habit in soybean

(2010) Z. Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Into the wild: The soybean genome meets its undomesticated relative

(2010) R. M. Stupar   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

(2010) M. Y. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic perspectives on crop domestication

(2010) Briana L. Gross et al.   TRENDS IN PLANT SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR

(2009) Ruibo Hu et al.   BMC MOLECULAR BIOLOGY

SoyBase, the USDA-ARS soybean genetics and genomics database

(2009) David Grant et al.   NUCLEIC ACIDS RESEARCH

Endogenous, Tissue-Specific Short Interfering RNAs Silence the Chalcone Synthase Gene Family in Glycine max Seed Coats

(2009) J. H. Tuteja et al.   PLANT CELL

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS