Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing

(2012) Md Shamimuzzaman et al.   BMC GENOMICS

Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max

(2012) Gracia Zabala et al.   BMC PLANT BIOLOGY

Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

(2011) Fred Y Peng et al.   BMC GENOMICS

Transcript profiling reveals expression differences in wild-type and glabrous soybean lines

(2011) Matt Hunt et al.   BMC PLANT BIOLOGY

Genome-Wide Survey and Expression Analysis of the Plant-Specific NAC Transcription Factor Family in Soybean During Development and Dehydration Stress

(2011) D. T. Le et al.   DNA RESEARCH

Functions and Application of the AP2/ERF Transcription Factor Family in Crop ImprovementF

(2011) Zhao-Shi Xu et al.   Journal of Integrative Plant Biology

Large-scale sequencing of normalized full-length cDNA library of soybean seed at different developmental stages and analysis of the gene expression profiles based on ESTs

(2011) Ai-Hua Sha et al.   MOLECULAR BIOLOGY REPORTS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds

(2011) Ingo Appelhagen et al.   PLANT JOURNAL

Global gene expression profiles in developing soybean seeds

(2011) Tomiko Asakura et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Flux of transcript patterns during soybean seed development

(2010) Sarah I Jones et al.   BMC GENOMICS

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling

(2010) Karl-Josef Dietz et al.   PROTOPLASMA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Endogenous, Tissue-Specific Short Interfering RNAs Silence the Chalcone Synthase Gene Family in Glycine max Seed Coats

(2009) J. H. Tuteja et al.   PLANT CELL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL