Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs

An in vitro inflammation model to study the Nrf2 and NF-κB crosstalk in presence of ferulic acid as modulator

(2018) Nadia Lampiasi et al.   IMMUNOBIOLOGY

Plakophilin-2 is required for transcription of genes that control calcium cycling and cardiac rhythm

(2017) Marina Cerrone et al.   Nature Communications

Endomucin inhibits VEGF-induced endothelial cell migration, growth, and morphogenesis by modulating VEGFR2 signaling

(2017) Cindy Park-Windhol et al.   Scientific Reports

Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium

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Can the monitoring of animal welfare parameters predict pork meat quality variation through the supply chain (from farm to slaughter)?1

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Refining genomewide association for growth and fat deposition traits in an F2 pig population1

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Top-Down Targeted Proteomics Reveals Decrease in Myosin Regulatory Light-Chain Phosphorylation That Contributes to Sarcopenic Muscle Dysfunction

(2016) Zachery R. Gregorich et al.   JOURNAL OF PROTEOME RESEARCH

Transcriptome analysis reveals that constant heat stress modifies the metabolism and structure of the porcine longissimus dorsi skeletal muscle

(2016) Yue Hao et al.   MOLECULAR GENETICS AND GENOMICS

Widespread control of calcium signaling by a family of SERCA-inhibiting micropeptides

(2016) D. M. Anderson et al.   Science Signaling

Whole-exome and transcriptome sequencing of refractory diffuse large B-cell lymphoma

(2016) Ha Young Park et al.   Oncotarget

Widespread control of calcium signaling by a family of SERCA-inhibiting micropeptides

(2016) D. M. Anderson et al.   Science Signaling

Genome Wide Association Studies (GWAS) Identify QTL on SSC2 and SSC17 Affecting Loin Peak Shear Force in Crossbred Commercial Pigs

(2016) Chunyan Zhang et al.   PLoS One

Elucidating a molecular mechanism that the deterioration of porcine meat quality responds to increased cortisol based on transcriptome sequencing

(2016) Xuebin Wan et al.   Scientific Reports

Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data

(2015) Francisco Peñagaricano et al.   BMC Systems Biology

Two-pore channel 1 interacts with citron kinase, regulating completion of cytokinesis

(2015) Jaime S Horton et al.   Channels

Implementing meta-analysis from genome-wide association studies for pork quality traits1

(2015) Y. L. Bernal Rubio et al.   JOURNAL OF ANIMAL SCIENCE

Phosphatidylinositol 4,5-Bisphosphate Homeostasis Regulated by Nir2 and Nir3 Proteins at Endoplasmic Reticulum-Plasma Membrane Junctions

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Phosphoinositides in Ca2+ signaling and excitation–contraction coupling in skeletal muscle: an old player and newcomers

(2015) Laszlo Csernoch et al.   JOURNAL OF MUSCLE RESEARCH AND CELL MOTILITY

An integrative systems genetics approach reveals potential causal genes and pathways related to obesity

(2015) Lisette J. A. Kogelman et al.   Genome Medicine

Cytoprotective Role of Nrf2 in Electrical Pulse Stimulated C2C12 Myotube

(2015) Masaki Horie et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations

(2014) Jose L Gualdrón Duarte et al.   BMC BIOINFORMATICS

Genome-wide eQTLs and heritability for gene expression traits in unrelated individuals

(2014) Shengjie Yang et al.   BMC GENOMICS

Discovery of Candidate Genes for Muscle Traits Based on GWAS Supported by eQTL-analysis

(2014) Siriluck Ponsuksili et al.   International Journal of Biological Sciences

Heritability and genomics of gene expression in peripheral blood

(2014) Fred A Wright et al.   NATURE GENETICS

α-Conotoxin RgIA protects against the development of nerve injury-induced chronic pain and prevents both neuronal and glial derangement

(2014) Lorenzo Di Cesare Mannelli et al.   PAIN

6-Phosphofructo-2-kinase (PFKFB3) promotes cell cycle progression and suppresses apoptosis via Cdk1-mediated phosphorylation of p27

(2014) A Yalcin et al.   Cell Death & Disease

A Splice Mutation in the PHKG1 Gene Causes High Glycogen Content and Low Meat Quality in Pig Skeletal Muscle

(2014) Junwu Ma et al.   PLoS Genetics

Cis and Trans Effects of Human Genomic Variants on Gene Expression

(2014) Julien Bryois et al.   PLoS Genetics

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

Methods of tagSNP selection and other variables affecting imputation accuracy in swine

(2013) Yvonne M Badke et al.   BMC GENETICS

Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels

(2013) Jose L Gualdrón Duarte et al.   BMC GENETICS

Genome-wide analysis of porcine backfat and intramuscular fat fatty acid composition using high-density genotyping and expression data

(2013) María Muñoz et al.   BMC GENOMICS

Genome-wide association of meat quality traits and tenderness in swine1,2

(2013) D. J. Nonneman et al.   JOURNAL OF ANIMAL SCIENCE

A genetical genomics approach reveals new candidates and confirms known candidate genes for drip loss in a porcine resource population

(2013) Hanna Heidt et al.   MAMMALIAN GENOME

Exploring the unknowns involved in the transformation of muscle to meat

(2013) E.M. England et al.   MEAT SCIENCE

Molecular advances in QTL discovery and application in pig breeding

(2013) Catherine W. Ernst et al.   TRENDS IN GENETICS

Feedback Regulation of Receptor-Induced Ca2+ Signaling Mediated by E-Syt1 and Nir2 at Endoplasmic Reticulum-Plasma Membrane Junctions

(2013) Chi-Lun Chang et al.   Cell Reports

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Estimation of linkage disequilibrium in four US pig breeds

(2012) Yvonne M Badke et al.   BMC GENOMICS

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Elucidating Molecular Networks That Either Affect or Respond to Plasma Cortisol Concentration in Target Tissues of Liver and Muscle

(2012) S. Ponsuksili et al.   GENETICS

Functional Chromaffin Cell Plasticity in Response to Stress: Focus on Nicotinic, Gap Junction, and Voltage-Gated Ca2+ Channels

(2012) Nathalie C. Guérineau et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

Segregation of Regulatory Polymorphisms with Effects on the Gluteus Medius Transcriptome in a Purebred Pig Population

(2012) Angela Cánovas et al.   PLoS One

A Genome-Wide Investigation of Expression Characteristics of Natural Antisense Transcripts in Liver and Muscle Samples of Pigs

(2012) Congying Chen et al.   PLoS One

Dissecting the regulatory architecture of gene expression QTLs

(2012) Daniel J Gaffney et al.   GENOME BIOLOGY

The interplay between SUCLA2, SUCLG2, and mitochondrial DNA depletion

(2011) Chaya Miller et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: eQTL localized genes involved in stress response, cell death, muscle disorders and metabolism

(2011) Laurence Liaubet et al.   BMC GENOMICS

Functional genomics and genetical genomics approaches towards elucidating networks of genes affecting meat performance in pigs

(2011) K. Wimmers et al.   Briefings in Functional Genomics

Integrating expression profiling and whole-genome association for dissection of fat traits in a porcine model

(2011) S. Ponsuksili et al.   JOURNAL OF LIPID RESEARCH

Genome-Wide Linkage Analysis of Global Gene Expression in Loin Muscle Tissue Identifies Candidate Genes in Pigs

(2011) Juan Pedro Steibel et al.   PLoS One

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

FERM proteins in animal morphogenesis

(2009) Ulrich Tepass   CURRENT OPINION IN GENETICS & DEVELOPMENT

Prefrontal cortex shotgun proteome analysis reveals altered calcium homeostasis and immune system imbalance in schizophrenia

(2009) Daniel Martins-de-Souza et al.   EUROPEAN ARCHIVES OF PSYCHIATRY AND CLINICAL NEUROSCIENCE

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One

Inositol trisphosphate and calcium signalling mechanisms

(2008) Michael J. Berridge   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle

(2008) Siriluck Ponsuksili et al.   BMC GENOMICS

Selective Transcriptional Profiling and Data Analysis Strategies for Expression Quantitative Trait Loci Mapping in Outbred F 2 Populations

(2008) Fernando F. Cardoso et al.   GENETICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Proteins in longissimus muscle of Korean native cattle and their relationship to meat quality

(2008) Nam Kuk Kim et al.   MEAT SCIENCE

A genome-wide association study in 574 schizophrenia trios using DNA pooling

(2008) G Kirov et al.   MOLECULAR PSYCHIATRY

Quantitative trait loci mapping in an F2 Duroc × Pietrain resource population: I. Growth traits1

(2007) D. B. Edwards et al.   JOURNAL OF ANIMAL SCIENCE

Quantitative trait locus mapping in an F2 Duroc × Pietrain resource population: II. Carcass and meat quality traits1

(2007) D. B. Edwards et al.   JOURNAL OF ANIMAL SCIENCE