Analysis of two domains with novel RNA-processing activities throws light on the complex evolution of ribosomal RNA biogenesis

CK1  and CK1  are components of human 40S subunit precursors required for cytoplasmic 40S maturation

(2014) I. Zemp et al.   JOURNAL OF CELL SCIENCE

A tRNA splicing operon: Archease endows RtcB with dual GTP/ATP cofactor specificity and accelerates RNA ligation

(2014) Kevin K. Desai et al.   NUCLEIC ACIDS RESEARCH

RNA Mimicry by the Fap7 Adenylate Kinase in Ribosome Biogenesis

(2014) Jérôme Loc'h et al.   PLOS BIOLOGY

Apoptosis-like cell death pathways in the unicellular parasite Toxoplasma gondii following treatment with apoptosis inducers and chemotherapeutic agents: a proof-of-concept study

(2013) Ayu Dewi Ni Nyoman et al.   APOPTOSIS

PDCD2 functions in cancer cell proliferation and predicts relapsed leukemia

(2013) Nora Barboza et al.   CANCER BIOLOGY & THERAPY

Zfrp8/PDCD2 is required in ovarian stem cells and interacts with the piRNA pathway machinery

(2013) S. Minakhina et al.   DEVELOPMENT

Characterization of a Novel RNA Polymerase Mutant That Alters DksA Activity

(2013) D. Satory et al.   JOURNAL OF BACTERIOLOGY

Ribonucleoproteins in Archaeal Pre-rRNA Processing and Modification

(2013) W. S. Vincent Yip et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Mapping the cleavage sites on mammalian pre-rRNAs: Where do we stand?

(2012) Sahra-Taylor Mullineux et al.   BIOCHIMIE

Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics

(2012) Dapeng Zhang et al.   Biology Direct

RGG motif proteins: Modulators of mRNA functional states

(2012) Purusharth Rajyaguru et al.   CELL CYCLE

PDCD2 knockdown inhibits erythroid but not megakaryocytic lineage differentiation of human hematopoietic stem/progenitor cells

(2012) Natalia A. Kokorina et al.   EXPERIMENTAL HEMATOLOGY

BRCT domains: A little more than kin, and less than kind

(2012) Dietlind L. Gerloff et al.   FEBS LETTERS

Structural basis of highly conserved ribosome recycling in eukaryotes and archaea

(2012) Thomas Becker et al.   NATURE

Rrp5p, Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S. cerevisiae

(2012) Thomas Hierlmeier et al.   NUCLEIC ACIDS RESEARCH

PDCD2 Controls Hematopoietic Stem Cell Differentiation During Development

(2012) Joseph Kramer et al.   STEM CELLS AND DEVELOPMENT

BRCT domains

(2011) Charles Chung Yun Leung et al.   CELL CYCLE

The kinase activity of human Rio1 is required for final steps of cytoplasmic maturation of 40S subunits

(2011) Barbara Widmann et al.   MOLECULAR BIOLOGY OF THE CELL

Functional diversification of the RING finger and other binuclear treble clef domains in prokaryotes and the early evolution of the ubiquitin system

(2011) A. Maxwell Burroughs et al.   Molecular BioSystems

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

PDCD2, a protein whose expression is repressed by BCL6, induces apoptosis in human cells by activation of the caspase cascade

(2010) Beverly W. Baron et al.   BLOOD CELLS MOLECULES AND DISEASES

Evolutionary history of the poly(ADP-ribose) polymerase gene family in eukaryotes

(2010) Matteo Citarelli et al.   BMC EVOLUTIONARY BIOLOGY

The Transcription Factor DksA Prevents Conflicts between DNA Replication and Transcription Machinery

(2010) Ashley K. Tehranchi et al.   CELL

PDCD2 is essential for inner cell mass development and embryonic stem cell maintenance

(2010) Weipeng Mu et al.   DEVELOPMENTAL BIOLOGY

5′-end surveillance by Xrn2 acts as a shared mechanism for mammalian pre-rRNA maturation and decay

(2010) Minshi Wang et al.   NUCLEIC ACIDS RESEARCH

The NIP7 protein is required for accurate pre-rRNA processing in human cells

(2010) Luis G. Morello et al.   NUCLEIC ACIDS RESEARCH

Analysis of two human pre-ribosomal factors, bystin and hTsr1, highlights differences in evolution of ribosome biogenesis between yeast and mammals

(2010) C. Carron et al.   NUCLEIC ACIDS RESEARCH

Genetic Interactions Show the Importance of rRNA Modification Machinery for the Role of Rps15p during Ribosome Biogenesis in S. cerevisiæ

(2010) Clément Bellemer et al.   PLoS One

Maturation of eukaryotic ribosomes: acquisition of functionality

(2010) Vikram Govind Panse et al.   TRENDS IN BIOCHEMICAL SCIENCES

Driving ribosome assembly

(2009) Dieter Kressler et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

It Takes Two to Tango: The Structure and Function of LIM, RING, PHD and MYND Domains

(2009) J. Matthews et al.   CURRENT PHARMACEUTICAL DESIGN

Programmed cell death-2 isoform1 is ubiquitinated by parkin and increased in the substantia nigra of patients with autosomal recessive Parkinson's disease

(2009) Jiro Fukae et al.   FEBS LETTERS

Microbial infections in eight genomic subtypes of chronic fatigue syndrome/myalgic encephalomyelitis

(2009) L. Zhang et al.   JOURNAL OF CLINICAL PATHOLOGY

Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins

(2009) Lakshminarayan M. Iyer et al.   Molecular BioSystems

Rrp17p Is a Eukaryotic Exonuclease Required for 5′ End Processing of Pre-60S Ribosomal RNA

(2009) Marlene Oeffinger et al.   MOLECULAR CELL

Insertion of Horizontally Transferred Genes within Conserved Syntenic Regions of Yeast Genomes

(2009) Thomas Rolland et al.   PLoS One

Nob1 binds the single-stranded cleavage site D at the 3'-end of 18S rRNA with its PIN domain

(2009) A. C. Lamanna et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNase MRP is required for entry of 35S precursor rRNA into the canonical processing pathway

(2009) L. Lindahl et al.   RNA

Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics

(2009) Zhihua Li et al.   PLOS BIOLOGY

TraR, a Homolog of a RNAP Secondary Channel Interactor, Modulates Transcription

(2009) Matthew D. Blankschien et al.   PLoS Genetics

Searching protein structure databases with DaliLite v.3

(2008) L. Holm et al.   BIOINFORMATICS

Origin of the nucleus and Ran-dependent transport to safeguard ribosome biogenesis in a chimeric cell

(2008) Gáspár Jékely   Biology Direct

Overexpression of the PDCD2-like gene results in Inhibited TNF-α production in activated Daudi cells

(2008) Q. Chen et al.   HUMAN IMMUNOLOGY

Function and Structure of a Prokaryotic Formylglycine-generating Enzyme

(2008) Brian L. Carlson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The novel MGC13096 protein is correlated with proliferation

(2007) Qiu Chen et al.   CELL BIOCHEMISTRY AND FUNCTION