Non-coding RNA regulation in pathogenic bacteria located inside eukaryotic cells

The small RNA RyhB homologs from Salmonella typhimurium participate in the response to S-nitrosoglutathione-induced stress

(2014) Paulina F. Calderón et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Differential expression of small RNAs from Burkholderia thailandensis in response to varying environmental and stress conditions

(2014) Chris J Stubben et al.   BMC GENOMICS

Tracking bacterial pathogens with genetically-encoded reporters

(2014) F.-X. Campbell-Valois et al.   FEBS LETTERS

Listeria monocytogenes Is Resistant to Lysozyme through the Regulation, Not the Acquisition, of Cell Wall-Modifying Enzymes

(2014) T. P. Burke et al.   JOURNAL OF BACTERIOLOGY

DNA transfer in the gastric pathogen Helicobacter pylori

(2014) Esther Fernandez-Gonzalez et al.   JOURNAL OF GASTROENTEROLOGY

Deletion of the membrane protein Lmo0412 increases the virulence of Listeria monocytogenes

(2014) Juan José Quereda et al.   MICROBES AND INFECTION

Physiological roles of small RNA molecules

(2014) C. Michaux et al.   MICROBIOLOGY-SGM

Single-cell western blotting

(2014) Alex J Hughes et al.   NATURE METHODS

Single-cell RNA-seq: advances and future challenges

(2014) Antoine-Emmanuel Saliba et al.   NUCLEIC ACIDS RESEARCH

A multicopy sRNA ofListeria monocytogenesregulates expression of the virulence adhesin LapB

(2014) Susanne Sievers et al.   NUCLEIC ACIDS RESEARCH

TargetRNA2: identifying targets of small regulatory RNAs in bacteria

(2014) Mary Beth Kery et al.   NUCLEIC ACIDS RESEARCH

Identification of Genes Preferentially Expressed by Highly Virulent Piscine Streptococcus agalactiae upon Interaction with Macrophages

(2014) Chang-Ming Guo et al.   PLoS One

Ultra Deep Sequencing of Listeria monocytogenes sRNA Transcriptome Revealed New Antisense RNAs

(2014) Sebastian Behrens et al.   PLoS One

Identification of Novel Small RNAs and Characterization of the 6S RNA of Coxiella burnetii

(2014) Indu Warrier et al.   PLoS One

Small RNAs in the control of RpoS, CsgD, and biofilm architecture ofEscherichia coli

(2014) Franziska Mika et al.   RNA Biology

Sequestration of a two-component response regulator by a riboswitch-regulated noncoding RNA

(2014) J. R. Mellin et al.   SCIENCE

The Listeria Small RNA Rli27 Regulates a Cell Wall Protein inside Eukaryotic Cells by Targeting a Long 5′-UTR Variant

(2014) Juan J. Quereda et al.   PLoS Genetics

Mechanisms of post-transcriptional gene regulation in bacterial biofilms

(2014) Luary C. Martínez et al.   Frontiers in Cellular and Infection Microbiology

Small RNA functions in carbon metabolism and virulence of enteric pathogens

(2014) Kai Papenfort et al.   Frontiers in Cellular and Infection Microbiology

Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells

(2014) Kristin Surmann et al.   Frontiers in Microbiology

Regulation of Bacterial Metabolism by Small RNAs Using Diverse Mechanisms

(2013) Maksym Bobrovskyy et al.   Annual Review of Genetics

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

(2013) Carsten Kröger et al.   Cell Host & Microbe

Functional determinants of the quorum-sensing non-coding RNAs and their roles in target regulation

(2013) Yi Shao et al.   EMBO JOURNAL

Bacterial sRNAs: Regulation in stress

(2013) Chee-Hock Hoe et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

A proteomics workflow for quantitative and time-resolved analysis of adaptation reactions of internalized bacteria

(2013) Henrike Pförtner et al.   METHODS

Influence of Small RNAs on Biofilm Formation Process in Bacteria

(2013) Mohammad Ali Ghaz-Jahanian et al.   MOLECULAR BIOTECHNOLOGY

Post-transcriptional activation of a diguanylate cyclase by quorum sensing small RNAs promotes biofilm formation inVibrio cholerae

(2013) Xiaonan Zhao et al.   MOLECULAR MICROBIOLOGY

Stabilization of cooperative virulence by the expression of an avirulent phenotype

(2013) Médéric Diard et al.   NATURE

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms

(2013) Tim van Opijnen et al.   NATURE REVIEWS MICROBIOLOGY

Determination of sRNA Expressions by RNA-seq in Yersinia pestis Grown In Vitro and during Infection

(2013) Yanfeng Yan et al.   PLoS One

A Novel Antisense RNA from the Salmonella Virulence Plasmid pSLT Expressed by Non-Growing Bacteria inside Eukaryotic Cells

(2013) Jesús Gonzalo-Asensio et al.   PLoS One

Simultaneous Transcriptional Profiling of Bacteria and Their Host Cells

(2013) Michael S. Humphrys et al.   PLoS One

Comparative genomics boosts target prediction for bacterial small RNAs

(2013) P. R. Wright et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of Salmonella Typhimurium small RNAs RyhB-1 and RyhB-2 in the oxidative stress response

(2013) Iván L. Calderón et al.   RESEARCH IN MICROBIOLOGY

An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding

(2013) I. J. Silva et al.   RNA

Small RNA-mediated regulation of host–pathogen interactions

(2013) Jennifer F Harris et al.   Virulence

RNA-Mediated Regulation in Pathogenic Bacteria

(2013) I. Caldelari et al.   Cold Spring Harbor Perspectives in Medicine

Global changes in gene expression by the opportunistic pathogen Burkholderia cenocepacia in response to internalization by murine macrophages

(2012) Jennifer S Tolman et al.   BMC GENOMICS

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Genome Expression Analysis of Nonproliferating Intracellular Salmonella enterica Serovar Typhimurium Unravels an Acid pH-Dependent PhoP-PhoQ Response Essential for Dormancy

(2012) Cristina Núñez-Hernández et al.   INFECTION AND IMMUNITY

Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308

(2012) Clayton C. Caswell et al.   MOLECULAR MICROBIOLOGY

Comparative transcriptomics of pathogenic and non-pathogenic Listeria species

(2012) Omri Wurtzel et al.   Molecular Systems Biology

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

The Bimodal Lifestyle of Intracellular Salmonella in Epithelial Cells: Replication in the Cytosol Obscures Defects in Vacuolar Replication

(2012) Preeti Malik-Kale et al.   PLoS One

Identification of a Novel Small RNA Modulating Francisella tularensis Pathogenicity

(2012) Guillaume Postic et al.   PLoS One

Translation Inhibition of the Developmental Cycle Protein HctA by the Small RNA IhtA Is Conserved across Chlamydia

(2012) Jeremiah Tattersall et al.   PLoS One

Turning self-destructing Salmonella into a universal DNA vaccine delivery platform

(2012) W. Kong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens

(2012) Ina Wilms et al.   RNA Biology

Dynamics ofSalmonellasmall RNA expression in non-growing bacteria located inside eukaryotic cells

(2012) Álvaro D. Ortega et al.   RNA Biology

An effort to make sense of antisense transcription in bacteria

(2012) Iñigo Lasa et al.   RNA Biology

New perspectives into bacterial DNA transfer to human cells

(2012) Matxalen Llosa et al.   TRENDS IN MICROBIOLOGY

Escherichia coli noncoding RNAs can affect gene expression and physiology of Caenorhabditis elegans

(2012) Huijie Liu et al.   Nature Communications

Control of Virulence by Small RNAs in Streptococcus pneumoniae

(2012) Beth Mann et al.   PLoS Pathogens

Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis

(2012) Yanjia J. Zhang et al.   PLoS Pathogens

Analysis of the host microRNA response toSalmonellauncovers the control of major cytokines by thelet-7family

(2011) Leon N Schulte et al.   EMBO JOURNAL

Transcript amplification from single bacterium for transcriptome analysis

(2011) Y. Kang et al.   GENOME RESEARCH

Association of ActA to Peptidoglycan Revealed by Cell Wall Proteomics of IntracellularListeria monocytogenes

(2011) Francisco García-del Portillo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteomic expression profiles of virulent and avirulent strains of Listeria monocytogenes isolated from macrophages

(2011) Janet R. Donaldson et al.   Journal of Proteomics

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA

(2011) Cynthia M. Sharma et al.   MOLECULAR MICROBIOLOGY

The essential genome of a bacterium

(2011) B. Christen et al.   Molecular Systems Biology

Development and applications of single-cell transcriptome analysis

(2011) Fuchou Tang et al.   NATURE METHODS

The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages

(2011) Mobarak A. Mraheil et al.   NUCLEIC ACIDS RESEARCH

Sequencing Illustrates the Transcriptional Response of Legionella pneumophila during Infection and Identifies Seventy Novel Small Non-Coding RNAs

(2011) Barbara A. Weissenmayer et al.   PLoS One

A Salmonella Small Non-Coding RNA Facilitates Bacterial Invasion and Intracellular Replication by Modulating the Expression of Virulence Factors

(2011) Hao Gong et al.   PLoS Pathogens

Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis

(2011) Kristine B. Arnvig et al.   PLoS Pathogens

Legionella Pneumophila Transcriptome during Intracellular Multiplication in Human Macrophages

(2011) Sébastien P. Faucher et al.   Frontiers in Microbiology

The transcriptional landscape of Chlamydia pneumoniae

(2011) Marco Albrecht et al.   GENOME BIOLOGY

Identification of small RNAs in Francisella tularensis

(2010) Guillaume Postic et al.   BMC GENOMICS

Regulatory RNA in Bacterial Pathogens

(2010) Kai Papenfort et al.   Cell Host & Microbe

Pathogen proteomes during infection: A basis for infection research and novel control strategies

(2010) Dirk Bumann   Journal of Proteomics

RNAs: regulators of bacterial virulence

(2010) Jonas Gripenland et al.   NATURE REVIEWS MICROBIOLOGY

Proteomic Analysis of Growth Phase-Dependent Expression of Legionella pneumophila Proteins Which Involves Regulation of Bacterial Virulence Traits

(2010) Tsuyoshi Hayashi et al.   PLoS One

Legionella pneumophila 6S RNA optimizes intracellular multiplication

(2010) S. P. Faucher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dissemination of invasiveSalmonellavia bacterial-induced extrusion of mucosal epithelia

(2010) Leigh A. Knodler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics of intracellular bacterial replication at the single cell level

(2010) Sophie Helaine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Innovative approach for transcriptomic analysis of obligate intracellular pathogen: selective capture of transcribed sequences of Ehrlichia ruminantium

(2009) Loïc Emboulé et al.   BMC MOLECULAR BIOLOGY

Identification of small RNAs inMycobacterium tuberculosis

(2009) Kristine B. Arnvig et al.   MOLECULAR MICROBIOLOGY

A Stably Engineered, Suicidal Strain ofListeria monocytogenesDelivers Protein and/or DNA to Fully Differentiated Intestinal Epithelial Monolayers

(2009) Cheng-Yi Kuo et al.   MOLECULAR PHARMACEUTICS

Population context determines cell-to-cell variability in endocytosis and virus infection

(2009) Berend Snijder et al.   NATURE

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

(2009) Rotem Sorek et al.   NATURE REVIEWS GENETICS

Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome

(2009) Marco Albrecht et al.   NUCLEIC ACIDS RESEARCH

Analysis of Pools of Targeted Salmonella Deletion Mutants Identifies Novel Genes Affecting Fitness during Competitive Infection in Mice

(2009) Carlos A. Santiviago et al.   PLoS Pathogens

Growth control in the Salmonella-containing vacuole

(2008) Francisco García-del Portillo et al.   CURRENT OPINION IN MICROBIOLOGY

Heterogeneity in tissue culture infection models: a source of novel host–pathogen interactions?

(2008) Francisco García-del Portillo   MICROBES AND INFECTION

The post-transcriptional regulator CsrA plays a central role in the adaptation of bacterial pathogens to different stages of infection in animal hosts

(2008) C. Lucchetti-Miganeh et al.   MICROBIOLOGY-SGM

A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles

(2008) Tianyan Song et al.   MOLECULAR MICROBIOLOGY

Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

(2008) Gilly Padalon-Brauch et al.   NUCLEIC ACIDS RESEARCH

Identification of Salmonella typhi genes expressed within macrophages by selective capture of transcribed sequences (SCOTS)

(2003) France Daigle et al.   MOLECULAR MICROBIOLOGY