Small RNAs in the control of RpoS, CsgD, and biofilm architecture ofEscherichia coli

Stress responses go three dimensional - the spatial order of physiological differentiation in bacterial macrocolony biofilms

(2014) Diego O. Serra et al.   ENVIRONMENTAL MICROBIOLOGY

Curli synthesis and biofilm formation in enteric bacteria are controlled by a dynamic small RNA module made up of a pseudoknot assisted by an RNA chaperone

(2014) Valérie Bordeau et al.   NUCLEIC ACIDS RESEARCH

Duplex formation between the sRNA DsrA andrpoSmRNA is not sufficient for efficient RpoS synthesis at low temperature

(2014) Hermann Hämmerle et al.   RNA Biology

Roles of adaptor proteins in regulation of bacterial proteolysis

(2013) Aurelia Battesti et al.   CURRENT OPINION IN MICROBIOLOGY

The EAL domain protein YciR acts as a trigger enzyme in a c-di-GMP signalling cascade in E. coli biofilm control

(2013) Sandra Lindenberg et al.   EMBO JOURNAL

A small RNA serving both the Hfq and CsrA regulons

(2013) E. Holmqvist et al.   GENES & DEVELOPMENT

Dual function of the McaS small RNA in controlling biofilm formation

(2013) M. G. Jorgensen et al.   GENES & DEVELOPMENT

Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella

(2013) Franziska Mika et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The MiaA tRNA Modification Enzyme Is Necessary for Robust RpoS Expression in Escherichia coli

(2013) K. M. Thompson et al.   JOURNAL OF BACTERIOLOGY

The Rcs Stress Response and Accessory Envelope Proteins Are Required for De Novo Generation of Cell Shape in Escherichia coli

(2013) D. K. Ranjit et al.   JOURNAL OF BACTERIOLOGY

Cellulose as an Architectural Element in Spatially Structured Escherichia coli Biofilms

(2013) D. O. Serra et al.   JOURNAL OF BACTERIOLOGY

Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices

(2013) Nicholas De Lay et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Positional Effects of AAN Motifs in rpoS Regulation by sRNAs and Hfq

(2013) Yi Peng et al.   JOURNAL OF MOLECULAR BIOLOGY

Conserved arginines on the rim of Hfq catalyze base pair formation and exchange

(2013) Subrata Panja et al.   NUCLEIC ACIDS RESEARCH

An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding

(2013) I. J. Silva et al.   RNA

Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoS

(2013) C. A. Henderson et al.   RNA

Microanatomy at Cellular Resolution and Spatial Order of Physiological Differentiation in a Bacterial Biofilm

(2013) D. O. Serra et al.   mBio

β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity

(2013) A. Gutierrez et al.   Nature Communications

Roles ofrpoS-activating small RNAs in pathways leading to acid resistance ofEscherichia coli

(2013) Geunu Bak et al.   MicrobiologyOpen

H-NS Regulation of IraD and IraM Antiadaptors for Control of RpoS Degradation

(2012) A. Battesti et al.   JOURNAL OF BACTERIOLOGY

Coordinated Cyclic-Di-GMP Repression of Salmonella Motility through YcgR and Cellulose

(2012) V. Zorraquino et al.   JOURNAL OF BACTERIOLOGY

The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E

(2012) Katarzyna J. Bandyra et al.   MOLECULAR CELL

Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli

(2012) Franziska Mika et al.   MOLECULAR MICROBIOLOGY

The csgD mRNA as a hub for signal integration via multiple small RNAs

(2012) Alex Boehm et al.   MOLECULAR MICROBIOLOGY

Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli

(2012) Mikkel Girke Jørgensen et al.   MOLECULAR MICROBIOLOGY

A complex network of small non-coding RNAs regulate motility inEscherichia coli

(2012) Nicholas De Lay et al.   MOLECULAR MICROBIOLOGY

A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli

(2012) Maureen K. Thomason et al.   MOLECULAR MICROBIOLOGY

Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition

(2012) E. Sauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hfq and Hfq-dependent small RNAs are major contributors to multicellular development inSalmonella entericaserovar Typhimurium

(2012) Claudia Monteiro et al.   RNA Biology

The functional Hfq-binding module of bacterial sRNAs consists of a double or single hairpin preceded by a U-rich sequence and followed by a 3' poly(U) tail

(2012) H. Ishikawa et al.   RNA

Role of the Biofilm Master Regulator CsgD in Cross-Regulation between Biofilm Formation and Flagellar Synthesis

(2011) H. Ogasawara et al.   JOURNAL OF BACTERIOLOGY

Competition among Hfq-binding small RNAs in Escherichia coli

(2011) Kyung Moon et al.   MOLECULAR MICROBIOLOGY

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA

(2011) Cynthia M. Sharma et al.   MOLECULAR MICROBIOLOGY

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD

(2011) Kathrin S. Fröhlich et al.   NUCLEIC ACIDS RESEARCH

Functional characterization of bacterial sRNAs using a network biology approach

(2011) S. R. Modi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural basis for RNA 3′-end recognition by Hfq

(2011) Evelyn Sauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Requirement of the CsdA DEAD-box helicase for low temperature riboregulation ofrpoSmRNA

(2011) Armin Resch et al.   RNA Biology

Rare codons play a positive role in the expression of the stationary phase sigma factor RpoS (σS) inEscherichia coli

(2011) Tim Kolmsee et al.   RNA Biology

Major role for mRNA binding and restructuring in sRNA recruitment by Hfq

(2011) T. J. Soper et al.   RNA

Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

(2010) Erik Holmqvist et al.   EMBO JOURNAL

Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA

(2010) Pierre Mandin et al.   EMBO JOURNAL

Regulatory role of MlrA in transcription activation of csgD, the master regulator of biofilm formation in Escherichia coli

(2010) Hiroshi Ogasawara et al.   FEMS MICROBIOLOGY LETTERS

Mechanism of Positive Regulation by DsrA and RprA Small Noncoding RNAs: Pairing Increases Translation and Protects rpoS mRNA from Degradation

(2010) C. A. McCullen et al.   JOURNAL OF BACTERIOLOGY

A liquid chromatography-coupled tandem mass spectrometry method for quantitation of cyclic di-guanosine monophosphate

(2010) Christian Spangler et al.   JOURNAL OF MICROBIOLOGICAL METHODS

RNase III Participates in GadY-Dependent Cleavage of the gadX-gadW mRNA

(2010) Jason A. Opdyke et al.   JOURNAL OF MOLECULAR BIOLOGY

Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarity

(2010) Ramakanth Madhugiri et al.   MOLECULAR GENETICS AND GENOMICS

Disruption of small RNA signaling caused by competition for Hfq

(2010) R. Hussein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Positive regulation by small RNAs and the role of Hfq

(2010) T. Soper et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The influence of Hfq and ribonucleases on the stability of the small non-coding RNA OxyS and its targetrpoSinE. coliis growth phase dependent

(2010) Sobha Rani Basineni et al.   RNA Biology

Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli

(2009) Ye Jin et al.   BMC GENOMICS

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

The BLUF-EAL protein YcgF acts as a direct anti-repressor in a blue-light response of Escherichia coli

(2009) N. Tschowri et al.   GENES & DEVELOPMENT

Signals, Regulatory Networks, and Materials That Build and Break Bacterial Biofilms

(2009) E. Karatan et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Structure of Escherichia coli Hfq bound to polyriboadenylate RNA

(2009) T. M. Link et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteolysis of σS (RpoS) and the general stress response in Escherichia coli

(2009) Regine Hengge   RESEARCH IN MICROBIOLOGY

Effect of Hfq on RprA−rpoSmRNA Pairing: Hfq−RNA Binding and the Influence of the 5′rpoSmRNA Leader Region†

(2008) Taylor Updegrove et al.   BIOCHEMISTRY

Inverse regulatory coordination of motility and curli-mediated adhesion in Escherichia coli

(2008) C. Pesavento et al.   GENES & DEVELOPMENT

Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation

(2008) Marie Bouvier et al.   MOLECULAR CELL

Control of RpoS in global gene expression of Escherichia coli in minimal media

(2008) Tao Dong et al.   MOLECULAR GENETICS AND GENOMICS

A role for Lon protease in the control of the acid resistance genes ofEscherichia coli

(2008) Johanna Heuveling et al.   MOLECULAR MICROBIOLOGY

Coordinating assembly of a bacterial macromolecular machine

(2008) Fabienne F. V. Chevance et al.   NATURE REVIEWS MICROBIOLOGY

The 5′ end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator

(2008) Maude Guillier et al.   NUCLEIC ACIDS RESEARCH

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

(2008) T. J. Soper et al.   RNA

Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5'-leader

(2008) A. Resch et al.   RNA