Simultaneous Transcriptional Profiling of Bacteria and Their Host Cells

Induction of VEGF and MMP-9 Expression by Toll-like Receptor 2/4 in Human Endothelial Cells Infected with Chlamydia Pneumoniae

(2017) R. Paolillo et al.   INTERNATIONAL JOURNAL OF IMMUNOPATHOLOGY AND PHARMACOLOGY

Conjunctival MicroRNA Expression in Inflammatory Trachomatous Scarring

(2013) Tamsyn Derrick et al.   PLoS Neglected Tropical Diseases

Trachoma: Protective and Pathogenic Ocular Immune Responses to Chlamydia trachomatis

(2013) Victor H. Hu et al.   PLoS Neglected Tropical Diseases

Transcription factor complex AP-1 mediates inflammation initiated byChlamydia pneumoniaeinfection

(2012) Anyou Wang et al.   CELLULAR MICROBIOLOGY

The early gene product EUO is a transcriptional repressor that selectively regulates promoters of Chlamydia late genes

(2012) Christopher J. Rosario et al.   MOLECULAR MICROBIOLOGY

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Cleavage of a putative metal permease in Chlamydia trachomatis yields an iron-dependent transcriptional repressor

(2012) C. C. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activation of canonical Wnt signalling is required for TGF-β-mediated fibrosis

(2012) Alfiya Akhmetshina et al.   Nature Communications

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

(2012) Georgia Giannoukos et al.   GENOME BIOLOGY

The extracellular matrix: an active or passive player in fibrosis?

(2011) Thomas N. Wight et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Microarrays, deep sequencing and the true measure of the transcriptome

(2011) John H Malone et al.   BMC BIOLOGY

Advances in tenascin-C biology

(2011) Kim S. Midwood et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

In VivoUltrastructural Analysis of the Intimate Relationship between Polymorphonuclear Leukocytes and the Chlamydial Developmental Cycle

(2011) Roger G. Rank et al.   INFECTION AND IMMUNITY

Human matrix metalloproteinases: An ubiquitarian class of enzymes involved in several pathological processes

(2011) Diego Sbardella et al.   MOLECULAR ASPECTS OF MEDICINE

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts

(2011) K. Sorber et al.   NUCLEIC ACIDS RESEARCH

Identification of Genes and Genomic Islands Correlated with High Pathogenicity in Streptococcus suis Using Whole Genome Tilling Microarrays

(2011) Xiao Zheng et al.   PLoS One

Integrin Structure, Activation, and Interactions

(2011) I. D. Campbell et al.   Cold Spring Harbor Perspectives in Biology

Extracellular Matrix Degradation and Remodeling in Development and Disease

(2011) P. Lu et al.   Cold Spring Harbor Perspectives in Biology

Development of a Transformation System for Chlamydia trachomatis: Restoration of Glycogen Biosynthesis by Acquisition of a Plasmid Shuttle Vector

(2011) Yibing Wang et al.   PLoS Pathogens

The transcriptional landscape of Chlamydia pneumoniae

(2011) Marco Albrecht et al.   GENOME BIOLOGY

Transient Overexpression of Gremlin Results in Epithelial Activation and Reversible Fibrosis in Rat Lungs

(2010) Laszlo Farkas et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays

(2010) Ranjit Kumar et al.   BMC GENOMICS

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

(2010) James R Bradford et al.   BMC GENOMICS

Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq

(2010) V. M. Bruno et al.   GENOME RESEARCH

Conjunctival Transcriptome in Scarring Trachoma

(2010) Matthew J. Burton et al.   INFECTION AND IMMUNITY

A Systemic Network for Chlamydia pneumoniae Entry into Human Cells

(2010) A. Wang et al.   JOURNAL OF BACTERIOLOGY

Chlamydia trachomatisPersistence In Vitro: An Overview

(2010) Priscilla B. Wyrick   JOURNAL OF INFECTIOUS DISEASES

Pathogenesis of Genital Tract Disease Due toChlamydia trachomatis

(2010) Toni Darville et al.   JOURNAL OF INFECTIOUS DISEASES

The Collagen Family

(2010) S. Ricard-Blum   Cold Spring Harbor Perspectives in Biology

Basement Membranes: Cell Scaffoldings and Signaling Platforms

(2010) P. D. Yurchenco   Cold Spring Harbor Perspectives in Biology

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Role of Gremlin in the Lung

(2009) Christine M. Costello et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Fibulins: Multiple roles in matrix structures and tissue functions

(2009) S. de Vega et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

New insights intoChlamydiaintracellular survival mechanisms

(2009) Jordan L. Cocchiaro et al.   CELLULAR MICROBIOLOGY

Chlamydia trachomatis-Infected Patients Display Variable Antibody Profiles against the Nine-Member Polymorphic Membrane Protein Family

(2009) C. Tan et al.   INFECTION AND IMMUNITY

Chlamydia trachomatis YtgA is an iron-binding periplasmic protein induced by iron restriction

(2009) J. D. Miller et al.   MICROBIOLOGY-SGM

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Tenascin-C is an endogenous activator of Toll-like receptor 4 that is essential for maintaining inflammation in arthritic joint disease

(2009) Kim Midwood et al.   NATURE MEDICINE

Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome

(2009) Marco Albrecht et al.   NUCLEIC ACIDS RESEARCH

A Genome-Wide Analysis of Small Regulatory RNAs in the Human Pathogen Group A Streptococcus

(2009) Nataly Perez et al.   PLoS One

The Genetic Signatures of Noncoding RNAs

(2009) John S. Mattick   PLoS Genetics

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The role of tenascin-C in tissue injury and tumorigenesis

(2009) Kim S. Midwood et al.   Journal of Cell Communication and Signaling

Epilysin (MMP-28) - structure, expression and potential functions

(2008) Sara A. Illman et al.   EXPERIMENTAL DERMATOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Progress in matrix metalloproteinase research

(2008) G MURPHY et al.   MOLECULAR ASPECTS OF MEDICINE

Stem cell transcriptome profiling via massive-scale mRNA sequencing

(2008) Nicole Cloonan et al.   NATURE METHODS

The beginning of the end for microarrays?

(2008) Jay Shendure   NATURE METHODS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

(2008) Peter A. C. 't Hoen et al.   NUCLEIC ACIDS RESEARCH

Transformation and isolation of allelic exchange mutants of Chlamydia psittaci using recombinant DNA introduced by electroporation

(2008) R. Binet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Focus on Molecules: Gremlin

(2007) Robert J. Wordinger et al.   EXPERIMENTAL EYE RESEARCH

Cellular and molecular mechanisms of fibrosis

(2007) TA Wynn   JOURNAL OF PATHOLOGY