Comparative transcriptomics of pathogenic and non-pathogenic Listeria species

The non-coding RNA world of the bacterial pathogenListeria monocytogenes

(2012) Jeffery R. Mellin et al.   RNA Biology

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Genomic island variability facilitates Prochlorococcus–virus coexistence

(2011) Sarit Avrani et al.   NATURE

The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages

(2011) Mobarak A. Mraheil et al.   NUCLEIC ACIDS RESEARCH

Antisense RNA protects mRNA from RNase E degradation by RNA–RNA duplex formation during phage infection

(2011) Damir Stazic et al.   NUCLEIC ACIDS RESEARCH

Mutation Detection with Next-Generation Resequencing through a Mediator Genome

(2011) Omri Wurtzel et al.   PLoS One

Genome-wide antisense transcription drives mRNA processing in bacteria

(2011) I. Lasa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An experimentally anchored map of transcriptional start sites in the model cyanobacteriumSynechocystissp. PCC6803

(2011) Jan Mitschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Illuminating the landscape of host-pathogen interactions with the bacterium Listeria monocytogenes

(2011) P. Cossart   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Staphylococcus aureus RNome and Its Commitment to Virulence

(2011) Brice Felden et al.   PLoS Pathogens

Regulatory RNA in Bacterial Pathogens

(2010) Kai Papenfort et al.   Cell Host & Microbe

Comprehensive Appraisal of the Extracellular Proteins from a Monoderm Bacterium: Theoretical and Empirical Exoproteomes ofListeria monocytogenesEGD-e by Secretomics

(2010) Mickaël Desvaux et al.   JOURNAL OF PROTEOME RESEARCH

An antisense RNA that governs the expression kinetics of a multifunctional virulence gene

(2010) Eun-Jin Lee et al.   MOLECULAR MICROBIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Validation of two ribosomal RNA removal methods for microbial metatranscriptomics

(2010) Shaomei He et al.   NATURE METHODS

Rfam: Wikipedia, clans and the "decimal" release

(2010) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

OMA 2011: orthology inference among 1000 complete genomes

(2010) A. M. Altenhoff et al.   NUCLEIC ACIDS RESEARCH

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs

(2009) Haley F Oliver et al.   BMC GENOMICS

A single-base resolution map of an archaeal transcriptome

(2009) O. Wurtzel et al.   GENOME RESEARCH

Specific Osmolyte Transporters Mediate Bile Tolerance in Listeria monocytogenes

(2009) D. Watson et al.   INFECTION AND IMMUNITY

Evidence for a major role of antisense RNAs in cyanobacterial gene regulation

(2009) Jens Georg et al.   Molecular Systems Biology

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

(2009) Rotem Sorek et al.   NATURE REVIEWS GENETICS

Transcriptome Complexity in a Genome-Reduced Bacterium

(2009) M. Guell et al.   SCIENCE

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Small RNA gene identification and mRNA target predictions in bacteria

(2008) C. Pichon et al.   BIOINFORMATICS

Identification of a  B-Dependent Small Noncoding RNA in Listeria monocytogenes

(2008) J. S. Nielsen et al.   JOURNAL OF BACTERIOLOGY

Listeria monocytogenes, a unique model in infection biology: an overview

(2008) Pascale Cossart et al.   MICROBES AND INFECTION

A Csr-type regulatory system, including small non-coding RNAs, regulates the global virulence regulator RovA of Yersinia pseudotuberculosis through RovM

(2008) Ann Kathrin Heroven et al.   MOLECULAR MICROBIOLOGY

TargetRNA: a tool for predicting targets of small RNA action in bacteria

(2008) B. Tjaden   NUCLEIC ACIDS RESEARCH