Transcriptome Changes during the Life Cycle of the Red Sponge, Mycale phyllophila (Porifera, Demospongiae, Poecilosclerida)

Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica

(2015) Selene L Fernandez-Valverde et al.   BMC GENOMICS

Proposal for a revised classification of the Demospongiae (Porifera)

(2015) Christine Morrow et al.   Frontiers in Zoology

Animal Phylogeny and Its Evolutionary Implications

(2014) Casey W. Dunn et al.   Annual Review of Ecology Evolution and Systematics

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Evolutionary origins of sensation in metazoans: functional evidence for a new sensory organ in sponges

(2014) Danielle A Ludeman et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptomic analysis of differential host gene expression upon uptake of symbionts: a case study with Symbiodinium and the major bioeroding sponge Cliona varians

(2014) Ana Riesgo et al.   BMC GENOMICS

BLIND ordering of large-scale transcriptomic developmental timecourses

(2014) L. Anavy et al.   DEVELOPMENT

Marine Sponge Derived Natural Products between 2001 and 2010: Trends and Opportunities for Discovery of Bioactives

(2014) Mohammad Mehbub et al.   Marine Drugs

The Analysis of Eight Transcriptomes from All Poriferan Classes Reveals Surprising Genetic Complexity in Sponges

(2014) Ana Riesgo et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

(2013)   JOURNAL OF HEREDITY

A NGS approach to the encrusting Mediterranean spongeCrella elegans(Porifera, Demospongiae, Poecilosclerida): transcriptome sequencing, characterization and overview of the gene expression along three life cycle stages

(2013) A. R. Pérez-Porro et al.   Molecular Ecology Resources

Deep metazoan phylogeny: When different genes tell different stories

(2013) Tetyana Nosenko et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Protein-DNA binding: complexities and multi-protein codes

(2013) T. Siggers et al.   NUCLEIC ACIDS RESEARCH

Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes

(2013) Malcolm S. Hill et al.   PLoS One

RNA-Seq and molecular docking reveal multi-level pesticide resistance in the bed bug

(2012) Praveen Mamidala et al.   BMC GENOMICS

Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions

(2012) Cecilia Conaco et al.   BMC GENOMICS

Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

(2012) Ana Riesgo et al.   Frontiers in Zoology

Global Diversity of Sponges (Porifera)

(2012) Rob W. M. Van Soest et al.   PLoS One

Origin of metazoan cadherin diversity and the antiquity of the classical cadherin/ -catenin complex

(2012) S. A. Nichols et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functionalization of a protosynaptic gene expression network

(2012) C. Conaco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The expression of Delta ligands in the sponge Amphimedon queenslandica suggests an ancient role for Notch signaling in metazoan development

(2012) Gemma S Richards et al.   EvoDevo

Artificial duplicate reads in sequencing data of 454 Genome Sequencer FLX System

(2011) H. Dong et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

The Multiple Origins of Complex Multicellularity

(2011) Andrew H. Knoll   Annual Review of Earth and Planetary Sciences

Growth performance of bath sponge (Spongia officinalis Linnaeus, 1759) farmed on suspended ropes in the Dardanelles (Turkey)

(2011) İhsan Çelik et al.   AQUACULTURE RESEARCH

The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus

(2011) Ben Ewen-Campen et al.   BMC GENOMICS

The biology of coral metamorphosis: Molecular responses of larvae to inducers of settlement and metamorphosis

(2011) L.C. Grasso et al.   DEVELOPMENTAL BIOLOGY

Epithelia, an Evolutionary Novelty of Metazoans

(2011) Sally P. Leys et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Evolution of RNA-Binding Proteins in Animals: Insights from Genome-Wide Analysis in the Sponge Amphimedon queenslandica

(2011) P. Kerner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Optimization of preservation and storage time of sponge tissues to obtain quality mRNA for next-generation sequencing

(2011) ANA RIESGO et al.   Molecular Ecology Resources

Mechanisms and functions of Hedgehog signalling across the metazoa

(2011) Philip W. Ingham et al.   NATURE REVIEWS GENETICS

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

(2010) Shawn T O'Neil et al.   BMC GENOMICS

Origin of animal epithelia: insights from the sponge genome

(2010) Bryony Fahey et al.   EVOLUTION & DEVELOPMENT

The genome of the sponge Amphimedon queenslandica provides new perspectives into the origin of Toll-like and interleukin 1 receptor pathways

(2010) Marie E. A. Gauthier et al.   EVOLUTION & DEVELOPMENT

Developmental transcriptome of Aplysia californica'

(2010) Andreas Heyland et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Demosponge EST Sequencing Reveals a Complex Genetic Toolkit of the Simplest Metazoans

(2010) M. Harcet et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Amphimedon queenslandica genome and the evolution of animal complexity

(2010) Mansi Srivastava et al.   NATURE

The initiation of metamorphosis as an ancient polyphenic trait and its role in metazoan life-cycle evolution

(2010) S. M. Degnan et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Biotechnological potential of marine natural products

(2010) Nobuhiro Fusetani   PURE AND APPLIED CHEMISTRY

Bacterial/archaeal/organellar polyadenylation

(2010) Bijoy K. Mohanty et al.   Wiley Interdisciplinary Reviews-RNA

A Computer Simulator for Assessing Different Challenges and Strategies of de Novo Sequence Assembly

(2010) Bjarne Knudsen et al.   Genes

Infrastructure for the life sciences: design and implementation of the UniProt website

(2009) Eric Jain et al.   BMC BIOINFORMATICS

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

Morphogenesis of epithelial tubes: Insights into tube formation, elongation, and elaboration

(2009) Deborah J. Andrew et al.   DEVELOPMENTAL BIOLOGY

Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Myr missing Precambrian fossil record of siliceous sponge spicules

(2009) E. A. SPERLING et al.   Geobiology

Epithelia and integration in sponges

(2009) S. P. Leys et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Gene expression microarray analysis encompassing metamorphosis and the onset of calcification in the scleractinian coral Montastraea faveolata

(2009) Alejandro Reyes-Bermudez et al.   Marine Genomics

Self-Recognition and Ca2+-Dependent Carbohydrate-Carbohydrate Cell Adhesion Provide Clues to the Cambrian Explosion

(2009) X. Fernandez-Busquets et al.   MOLECULAR BIOLOGY AND EVOLUTION

Widespread transcriptional changes pre-empt the critical pelagic-benthic transition in the vetigastropodHaliotis asinina

(2009) ELIZABETH A. WILLIAMS et al.   MOLECULAR ECOLOGY

Fossil steroids record the appearance of Demospongiae during the Cryogenian period

(2009) Gordon D. Love et al.   NATURE

The origin and evolution of synapses

(2009) Tomás J. Ryan et al.   NATURE REVIEWS NEUROSCIENCE

The functional roles of marine sponges

(2008) James J. Bell   ESTUARINE COASTAL AND SHELF SCIENCE

What do we really know about sponge-microbial symbioses?

(2008) Nicole S Webster et al.   ISME Journal

The formation of epithelial tubes

(2008) S. Chung et al.   JOURNAL OF CELL SCIENCE

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

(2008) Andrew Grimson et al.   NATURE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH