Optimization of preservation and storage time of sponge tissues to obtain quality mRNA for next-generation sequencing

RNA interference in marine and freshwater sponges: actin knockdown in Tethya wilhelma and Ephydatia muelleri by ingested dsRNA expressing bacteria

(2011) Ajna S Rivera et al.   BMC BIOTECHNOLOGY

Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals

(2011) PHILIPPE GAYRAL et al.   Molecular Ecology Resources

Piwi expression in archeocytes and choanocytes in demosponges: insights into the stem cell system in demosponges

(2010) Noriko Funayama et al.   EVOLUTION & DEVELOPMENT

Structure and expression of conserved Wnt pathway components in the demosponge Amphimedon queenslandica

(2010) Maja Adamska et al.   EVOLUTION & DEVELOPMENT

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Evaluating methods for the preservation and extraction of DNA and RNA for analysis of microbial communities in marine sponges

(2010) Rachel L. Simister et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

mRNA and microRNA quality control for RT-qPCR analysis

(2010) C. Becker et al.   METHODS

Demosponge EST Sequencing Reveals a Complex Genetic Toolkit of the Simplest Metazoans

(2010) M. Harcet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes

(2010) K. R. ELMER et al.   MOLECULAR ECOLOGY

The Amphimedon queenslandica genome and the evolution of animal complexity

(2010) Mansi Srivastava et al.   NATURE

Phylogenomics Revives Traditional Views on Deep Animal Relationships

(2009) Hervé Philippe et al.   CURRENT BIOLOGY

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

The digital generation

(2009) Nathan Blow   NATURE

Assessing the root of bilaterian animals with scalable phylogenomic methods

(2009) A. Hejnol et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Characterizing natural variation using next-generation sequencing technologies

(2009) Yoav Gilad et al.   TRENDS IN GENETICS

The evolutionary origin of the Runx/CBF-beta transcription factors - studies of the most basal metazoans

(2008) James C Sullivan et al.   BMC EVOLUTIONARY BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS

Simultaneous Extraction of High-Quality RNA and DNA from Small Tissue Samples

(2008) D. A. Triant et al.   JOURNAL OF HEREDITY

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

(2008) M. Sultan et al.   SCIENCE