iMiRNA-SSF: Improving the Identification of MicroRNA Precursors by Combining Negative Sets with Different Distributions

ncRDeathDB: A comprehensive bioinformatics resource for deciphering network organization of the ncRNA-mediated cell death system

(2015) Deng Wu et al.   Autophagy

Application of learning to rank to protein remote homology detection

(2015) Bin Liu et al.   BIOINFORMATICS

Similarity computation strategies in the microRNA-disease network: a survey

(2015) Quan Zou et al.   Briefings in Functional Genomics

Exploratory Predicting Protein Folding Model with Random Forest and Hybrid Features

(2015) Xuewei Zhao et al.   Current Proteomics

iMiRNA-PseDPC: microRNA precursor identification with a pseudo distance-pair composition approach

(2015) Bin Liu et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Identification of microRNA precursor with the degenerate K-tuple or Kmer strategy

(2015) Bin Liu et al.   JOURNAL OF THEORETICAL BIOLOGY

miRNA-dis: microRNA precursor identification based on distance structure status pairs

(2015) Bin Liu et al.   Molecular BioSystems

Protein remote homology detection by combining Chou’s distance-pair pseudo amino acid composition and principal component analysis

(2015) Bin Liu et al.   MOLECULAR GENETICS AND GENOMICS

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

DNA binding protein identification by combining pseudo amino acid composition and profile-based protein representation

(2015) Bin Liu et al.   Scientific Reports

Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach

(2015) Bin Liu et al.   PLoS One

repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects

(2014) Bin Liu et al.   BIOINFORMATICS

nDNA-prot: identification of DNA-binding proteins based on unbalanced classification

(2014) Li Song et al.   BMC BIOINFORMATICS

A Discussion of MicroRNAs in Cancers

(2014) Shi Hua et al.   Current Bioinformatics

PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou’s PseAAC and Physicochemical Distance Transformation

(2014) Bin Liu et al.   Molecular Informatics

ViRBase: a resource for virus–host ncRNA-associated interactions

(2014) Yanhui Li et al.   NUCLEIC ACIDS RESEARCH

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

(2014) Bin Liu et al.   PLoS One

RAID: a comprehensive resource for human RNA-associated (RNA-RNA/RNA-protein) interaction

(2014) X. Zhang et al.   RNA

Connect the dots

(2013) Yifei Li et al.   Autophagy

Briefing in family characteristics of microRNAs and their applications in cancer research

(2013) Qicong Wang et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

Survey of MapReduce frame operation in bioinformatics

(2013) Q. Zou et al.   BRIEFINGS IN BIOINFORMATICS

Causal gene identification using combinatorial V-structure search

(2013) Ruichu Cai et al.   NEURAL NETWORKS

LibD3C: Ensemble classifiers with a clustering and dynamic selection strategy

(2013) Chen Lin et al.   NEUROCOMPUTING

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Mammalian ncRNA-disease repository: a global view of ncRNA-mediated disease network

(2013) Y Wang et al.   Cell Death & Disease

Integrated Sequence-Structure Motifs Suffice to Identify microRNA Precursors

(2012) Xiuqin Liu et al.   PLoS One

A two-stage feature selection method for text categorization by using information gain, principal component analysis and genetic algorithm

(2011) Harun Uğuz   KNOWLEDGE-BASED SYSTEMS

What is Unequal among the Equals? Ranking Equivalent Rules from Gene Expression Data

(2010) Ruichu Cai et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

BASSUM: A Bayesian semi-supervised method for classification feature selection

(2010) Ruichu Cai et al.   PATTERN RECOGNITION

A study of microRNAsin silicoandin vivo: bioinformatics approaches to microRNA discovery and target identification

(2009) Malik Yousef et al.   FEBS Journal

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

(2009) Michael Hackenberg et al.   NUCLEIC ACIDS RESEARCH

An efficient gene selection algorithm based on mutual information

(2008) Ruichu Cai et al.   NEUROCOMPUTING